View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8400_low_5 (Length: 405)
Name: NF8400_low_5
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 47688332 - 47688700
Alignment:
| Q |
18 |
agaagttagaataccaattaggctagaagaaagaacaatatgaccaacactttggtgttcttaagaaattaaactttgacaaatgcgatcttcatcaaaa |
117 |
Q |
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| T |
47688332 |
agaagttagaataccaattaggctagaagaaagaacaatatgaccaacactttggtgttcttgagaaattaaactttgacaaatgcgatcttcatcaaaa |
47688431 |
T |
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| Q |
118 |
caaaatatcaaattggtgcataatttaatttttaaaatttcaagactgttttgctttgatccgtctcttctacgtatatctaaagatttgtttaaagatt |
217 |
Q |
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| T |
47688432 |
caaaatatcaaattggtgcataatttaatttttaaaatttcaagactgttttgctttgatccgtctcttctacgtatatctaaagatttgtttaaagatt |
47688531 |
T |
|
| Q |
218 |
gatccgtctcttctaattaagtatatctaaagatttgttttcctttgaaatcttgatttaagttgacatgacacattgttactacgttctctcgaatcca |
317 |
Q |
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| T |
47688532 |
gatccgtctcttctaattaagtatatctaaagatttgttttcctttgaaatcttgatttaagttgacatgacacattgttactacgttctctcgaatcca |
47688631 |
T |
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| Q |
318 |
aagtaaattgttgttggaactggttaatcatcacaccaatcaagatatcttcattttatttctatgcta |
386 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47688632 |
aagtgaattgttgttggaattggttaatcatcacaccaatcaagatatctttattttatttctatgcta |
47688700 |
T |
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