View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8400_low_7 (Length: 344)
Name: NF8400_low_7
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_low_7 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 928459 - 928116
Alignment:
| Q |
1 |
cttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcacacctgaagataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928459 |
cttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcacacctgaagataaa |
928360 |
T |
|
| Q |
101 |
agcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcat |
200 |
Q |
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| T |
928359 |
agcaggaaacaatctgcagaacttggctataatctaagctctaaatattggggtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcat |
928260 |
T |
|
| Q |
201 |
tcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928259 |
tcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
928160 |
T |
|
| Q |
301 |
aactcttaggaagtatttggtcatgaaaggaaaaagcagagata |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928159 |
aactcttaggaagtatttggtcatgaaaggaaaaagcagagata |
928116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 924083 - 923755
Alignment:
| Q |
22 |
caagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------acctgaagataaaagcaggaaacaatct |
115 |
Q |
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||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||| | | | | | ||||| |||||| |||||| ||| | |
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| T |
924083 |
caagtttctatggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaatgt |
923984 |
T |
|
| Q |
116 |
gcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgatgaattttcgt |
215 |
Q |
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||||||||||||||| |||| |||||||||||||| |||||||| ||| ||| |||| |||||||||| | |||||| |||||||| ||| || || | |
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| T |
923983 |
gcagaacttggctatgttctaggctctaaatattggggtaaaggggttgccacttgtgttgtgaaacaagtggttaaggttgcattctgtgagttgtctt |
923884 |
T |
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| Q |
216 |
acttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagta |
315 |
Q |
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| T |
923883 |
acttggaaaggcttgaagctcttgttgatgtggaaaatgctgggtctcaaagagttttggagaaagctggtttccaaaaagagggagttcttaggaaata |
923784 |
T |
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| Q |
316 |
tttggtcatgaaaggaaaaagcagagata |
344 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
923783 |
tttggtcatgaaaggaaaaagtagagata |
923755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 939384 - 939035
Alignment:
| Q |
1 |
cttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgt--tca----cacctgaa |
94 |
Q |
| |
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|||||| |||| |||| || ||||||||| || ||||||||||||||| |||| |||||||||||||| ||||| | || ||| ||||| | |
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| T |
939384 |
cttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgctattggccgtgtttctctgaaatcaagatcacctcat |
939285 |
T |
|
| Q |
95 |
gataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaaga |
194 |
Q |
| |
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|||||||||||||| || |||||||||||| |||| |||| ||||||||| ||| ||||||| || | ||| | || |||||||||| | |||||| |
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| T |
939284 |
gataaaagcaggaacaaaactgcagaacttgcctatgttctagcctctaaatactggggtaaaggaatagccacgtatgttgtgaaacaagtagttaagg |
939185 |
T |
|
| Q |
195 |
ttgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaa |
294 |
Q |
| |
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|||||||| ||| || || |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
939184 |
ttgcattcagtgagttgtcacacttggaaagagttgaagcttttgttgatgtggaaaatgttggatctcaaagggttttggagaaagctggtttccaaaa |
939085 |
T |
|
| Q |
295 |
ggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagata |
344 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
939084 |
ggagggaactcttgggaagtatttggtcatgaaaggaaaaagcagagata |
939035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 139 - 344
Target Start/End: Complemental strand, 935451 - 935246
Alignment:
| Q |
139 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctctt |
238 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||||||| |||||||| |
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| T |
935451 |
ctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttgcattcagtgaatttcaatccttggaaaggcttcaagctctt |
935352 |
T |
|
| Q |
239 |
gttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagca |
338 |
Q |
| |
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|||||| |||| ||||||||||| |||| || | ||||||| |||||| ||||| ||||| ||||||||||||| | || | ||||||||||||| |
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| T |
935351 |
gttgatatggataatgttgggtcgcaaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagca |
935252 |
T |
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| Q |
339 |
gagata |
344 |
Q |
| |
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|||||| |
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| T |
935251 |
gagata |
935246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 344
Target Start/End: Complemental strand, 925995 - 925784
Alignment:
| Q |
139 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagatt------gcattcgatgaattttcgtacttggaaaggcttgaa |
232 |
Q |
| |
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||||||||| ||| |||||||||||| ||| ||||||||||||||||| |||| | || |||||| ||||||||| || ||||||||||||||| |
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| T |
925995 |
ctctaaatactggggtaaagggattgccacgtgtgctgtgaaacaaatggttatggttacatttgcattcagtgaattttcatatttggaaaggcttgaa |
925896 |
T |
|
| Q |
233 |
gctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaa |
332 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| || | || |||| |||||| ||||| |||||| |||||| |||||| | || | ||||||| |
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| T |
925895 |
gctcttgttgatgtggataatgttgggtcacaaagagtacttgaaaaagttggttttcaaaaagagggagttcttagaaagtatgtattctttaaaggaa |
925796 |
T |
|
| Q |
333 |
aaagcagagata |
344 |
Q |
| |
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|||||||||||| |
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| T |
925795 |
aaagcagagata |
925784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 940404 - 940075
Alignment:
| Q |
13 |
tatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------acctgaagataaaagcagg |
106 |
Q |
| |
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|||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||| || || ||| ||||||| | |||| | ||| || ||||| |
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| T |
940404 |
tatagaaagcaagtatctatgttgcaaaacaatatgcctcaatgatcgtactatcgggtgagttattttgttttcgagattacct-acgatgaatgcagg |
940306 |
T |
|
| Q |
107 |
aaacaatctgcagaacttggctataatctaagctctaaatattgg-tgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgat |
205 |
Q |
| |
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|| ||| || ||||||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||| | |||||| |||||||| | |
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| T |
940305 |
aacaaatgtgtagaacttggctatgttctaggctataaatattgggtgtaaagggatttccacatgtgctgtgaaacaagtagttaaggttgcattcagt |
940206 |
T |
|
| Q |
206 |
gaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactc |
305 |
Q |
| |
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|| ||| | || |||||||||||||| ||| | ||||||||||| |||||||||| || || ||||||||||||||||||||||||| ||| | |
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| T |
940205 |
gagtttccacacatggaaaggcttgaa--tctattagatgtggaaaacgttgggtctctgagagtgctggagaaagctggtttccaaaaggaaggagtac |
940108 |
T |
|
| Q |
306 |
ttaggaagtatttggtcatgaaaggaaaaagca |
338 |
Q |
| |
|
| || |||||| || ||||||||| ||||||| |
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| T |
940107 |
tcagaaagtatctgaacatgaaagggaaaagca |
940075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 46648277 - 46648079
Alignment:
| Q |
102 |
gcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcatt |
201 |
Q |
| |
|
||||||| ||||||| |||||||||||| | | ||||| || |||||| | |||||||||| |||| || ||| |||||| | ||| | |||||| |
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| T |
46648277 |
gcaggaacaaatctgctgaacttggctatgctatgagctccaagtattggggcaaagggattgccacacttgttgtcaaacaagtggttgaagctgcatt |
46648178 |
T |
|
| Q |
202 |
cgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
300 |
Q |
| |
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| || ||| | |||||||||||||||||||||| ||||||||||||||| | | ||||| || || |||||||| |||||||| |||| |||||| |
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| T |
46648177 |
taaggagtttccatacttggaaaggcttgaagctcaagttgatgtggaaaatatggcttctcagagagtattggagaaggctggttttcaaagggaggg |
46648079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 46656492 - 46656419
Alignment:
| Q |
215 |
tacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggttt |
288 |
Q |
| |
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|||||||| |||||||| |||| ||||||||||||||||| | ||||||||||| |||||||| |||||||| |
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| T |
46656492 |
tacttggagaggcttgaggctcgagttgatgtggaaaatgtggcttctcaaagggtgttggagaaggctggttt |
46656419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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