View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8400_low_9 (Length: 318)
Name: NF8400_low_9
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 27720392 - 27720670
Alignment:
| Q |
15 |
tattcttgataaagcaagacgtggaggactaaacttaatccaaacatatgtgttttggaatggtcatgaacctgagaaagacaaggtatgtnnnnnnnnn |
114 |
Q |
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| T |
27720392 |
tattcttgataaagcaagacgtggaggactaaacttaatccaaacatatgtattttggaatggtcatgaacctgagaaagacaaggtatgtaaaaaaaaa |
27720491 |
T |
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| Q |
115 |
ntcttaaaccagacctaatgaagatgaaggtatgttcagattaattaatgccctcgtttgtgacaaggtaatttgttccactatatacatatgcaggtga |
214 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27720492 |
-tcttaaaccagacctattgaa------ggtatgttcagattaattaatgtcctcgtttgtgacaaggtaatttgttccactgtatacatatgcaggtga |
27720584 |
T |
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| Q |
215 |
atttcgaaggccggtatgatttggtgaaattccttaagcttgtacaagagaaaggaatgtatgttacccttagaattggccctttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27720585 |
atttcgaaggccggtatgatttggtgaaattccttaagcttgtacaagagaaaggaatgtatgttacccttagaattggccctttc |
27720670 |
T |
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