View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8401_low_1 (Length: 728)

Name: NF8401_low_1
Description: NF8401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8401_low_1
NF8401_low_1
[»] chr4 (3 HSPs)
chr4 (17-644)||(22054279-22054920)
chr4 (561-663)||(29298389-29298491)
chr4 (458-549)||(29298518-29298609)
[»] chr7 (1 HSPs)
chr7 (566-657)||(33829720-33829810)
[»] chr1 (1 HSPs)
chr1 (561-658)||(930021-930117)
[»] chr5 (2 HSPs)
chr5 (552-587)||(6600631-6600666)
chr5 (617-663)||(6600563-6600609)
[»] chr2 (1 HSPs)
chr2 (561-660)||(4659763-4659862)
[»] chr6 (1 HSPs)
chr6 (564-663)||(3730894-3730990)
[»] chr8 (1 HSPs)
chr8 (17-90)||(9282244-9282317)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 644
Target Start/End: Original strand, 22054279 - 22054920
Alignment:
Q  17 gacatcaaatgaataccacagttatttgaaccaccatgacctcaccaagtagagttcatcatattctcaatagtcaacacaagagaagtaggtaggaaga 116  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22054279 gacatcaaatgaataccacagttatttgaactaccatgaccccaccaagtagagttcatcatactctcaatagtcaacacaagagaagtaggtaggaaga 22054378  T
Q  117 atatactcatacataagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagataaacacttactactacacaaattaaaannn 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||         
T  22054379 atatactcatacataagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagatgaacacttactgctacacaaattaattttt 22054478  T
Q  217 nnnn-cttccaaattcgatctttgataaagctaaaagttcctgacttattcgtcttaatctagatggtagcccgaggtacttactagtaaataaaattgc 315  Q
         |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||| |||||||| ||    
T  22054479 tttttcttccaaattcgatctttgataaagctaaaagttcccgacttattcctcttaatcaagatggtagcttgaggtacttactagttaataaaatcgc 22054578  T
Q  316 atgtacacccaaataattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgac-tttggtagactta-agcttaaccaga 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  22054579 atgtacacccaaataattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgacttttggtagacttagagcttaaccaga 22054678  T
Q  414 cactactttctattgtggataaatctaaccatgctt-----------gttggttagtagagcaaataactcaacttagtctaataagtactttgttttgt 502  Q
    |||| |||||||||||||||||||||||| ||| ||           ||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  22054679 cactgctttctattgtggataaatctaactatgtttgtggttagttagttggcttgtagagcaaataactcaacttagtctaataagtactttgttttgt 22054778  T
Q  503 attcatttgatagaattcatatcacacataaatatcttgtatcataaatactatgcaatacaattcaccataaacaaaactctcttcatcctctctattc 602  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22054779 attcatttgatagaattcatatcacacattaatatcttgtatcataaccactatgcaatacaattcaccataaacaaaactctcttcatcctctctattc 22054878  T
Q  603 ttaacatagatctgaacgttctgaactctctcatttctctta 644  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  22054879 ttaacacagatctgaacgttctgaactctctcatttctctta 22054920  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 561 - 663
Target Start/End: Complemental strand, 29298491 - 29298389
Alignment:
Q  561 tacaattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagca 660  Q
    |||||||||| || ||||||| ||||||||||||||| ||||| |||||| |   ||||||| |||||| |||| ||||||| |||||||||||||||||    
T  29298491 tacaattcactatcaacaaaaatctcttcatcctctcaattctcaacataaaatagaacgttttgaactttctcctttctctcatcattgagtgtaagca 29298392  T
Q  661 tca 663  Q
    |||    
T  29298391 tca 29298389  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 549
Target Start/End: Complemental strand, 29298609 - 29298518
Alignment:
Q  458 gtagagcaaataactcaacttagtctaataagtactttgttttgtattcatttgatagaattcatatcacacata--aatatcttgtatcataa 549  Q
    ||||||||| ||||||||||||| ||| ||||||||| |||||||||||| |||||| || ||||||   |||||  ||||| |||||||||||    
T  29298609 gtagagcaagtaactcaacttagccta-taagtactt-gttttgtattcaattgatataactcatatattacatatcaatatattgtatcataa 29298518  T

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Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 566 - 657
Target Start/End: Original strand, 33829720 - 33829810
Alignment:
Q  566 ttcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaa 657  Q
    |||||||||||||||||||||||||||||||||||||| |  | || || ||||||| |||||||||| ||||||||||||| || ||||||    
T  33829720 ttcaccataaacaaaactctcttcatcctctctattctcattacagttcagaacgttttgaactctct-atttctcttatcagtgtgtgtaa 33829810  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 658
Target Start/End: Original strand, 930021 - 930117
Alignment:
Q  561 tacaattcaccataaacaaaactctcttcatcctctctattct--taacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaag 658  Q
    |||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||  ||||||||||||| ||||| ||||||| |||| ||||||||||    
T  930021 tacaattcaccataaacaaaactctcttcatcttctctattctcataacata-at-agaacgttctgaacgctctc-tttctctcatcagtgagtgtaag 930117  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 587
Target Start/End: Complemental strand, 6600666 - 6600631
Alignment:
Q  552 actatgcaatacaattcaccataaacaaaactctct 587  Q
    ||||||||||||||||||||||||||||||||||||    
T  6600666 actatgcaatacaattcaccataaacaaaactctct 6600631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 6600609 - 6600563
Alignment:
Q  617 aacgttctgaactctctcatttctcttatcattgagtgtaagcatca 663  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  6600609 aacgttctgaactctctattttctctcatcattgagtgtaagcatca 6600563  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 561 - 660
Target Start/End: Original strand, 4659763 - 4659862
Alignment:
Q  561 tacaattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagca 660  Q
    ||||||||||||||||||||||||| |||||||||  |||||| | || | | | |||| ||  ||||| |||| ||||||| |||| ||||||||||||    
T  4659763 tacaattcaccataaacaaaactctattcatcctcattattctcatcacataacagaacatttggaactatctcttttctctcatcagtgagtgtaagca 4659862  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 663
Target Start/End: Original strand, 3730894 - 3730990
Alignment:
Q  564 aattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagcatca 663  Q
    |||||||||||||||||||||||||||||||||    |||   || | | | ||||||||| || |||||| ||||||| |||||||| |||||||||||    
T  3730894 aattcaccataaacaaaactctcttcatcctcttcgatct---cacaaaacagaacgttctaaattctctcttttctctcatcattgaatgtaagcatca 3730990  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 9282317 - 9282244
Alignment:
Q  17 gacatcaaatgaataccacagttatttgaaccaccatgacctcaccaagtagagttcatcatattctcaatagt 90  Q
    |||||| |||||||| |||  || ||||||||||| | ||| |||||| | ||||||||||| |||||||||||    
T  9282317 gacatccaatgaataacactattgtttgaaccaccgtaaccccaccaaattgagttcatcatcttctcaatagt 9282244  T

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