View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8401_low_5 (Length: 221)

Name: NF8401_low_5

Description: NF8401

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8401_low_5

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 199; E-Value: 1e-108

Query Start/End: Original strand, 1 - 207

Target Start/End: Complemental strand, 46628559 - 46628353

Alignment:

Q	1	tatgaatcaactaaaacgtgtaaataaataaatgaagattaaaataaatcgtggaaagcagaagatataacaaacatgcatattcatggataacaatcaa	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46628559	tatgaatcaactaaaacgtgtaaataaataaatgaagattaaaataaatcgtggaaagcagaagatataacaaacatgcacattcatggataacaatcaa	46628460	T

Q	101	tcgaaatattgaaagtatacatgtttgtccctataaatcaatgttatttgtcacacacatatacaataacaaaagcacgttggttgttcaagttaagggt	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	46628459	tcgaaatattgaaagtatacatgtttgtccctataaatcaatgttatttgtcacacacatatacaataacaaaagcacgttggttgatcaagttaagggt	46628360	T

Q	201	tgttgat	207	Q
		\|\|\|\|\|\|\|
T	46628359	tgttgat	46628353	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 30 - 76

Target Start/End: Original strand, 56085949 - 56085995

Alignment:

Q	30	aaatgaagattaaaataaatcgtggaaagcagaagatataacaaaca	76	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	56085949	aaatgaacagtaaaataaatggtggaaagcagaaaatataacaaaca	56085995	T

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