View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8401_low_6 (Length: 218)

Name: NF8401_low_6
Description: NF8401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8401_low_6
NF8401_low_6
[»] chr3 (4 HSPs)
chr3 (59-214)||(28432077-28432232)
chr3 (2-62)||(28431995-28432055)
chr3 (91-148)||(10437208-10437266)
chr3 (94-148)||(15029349-15029404)
[»] chr6 (6 HSPs)
chr6 (59-181)||(8753663-8753786)
chr6 (59-179)||(7093159-7093280)
chr6 (59-147)||(12913028-12913117)
chr6 (99-144)||(30975599-30975645)
chr6 (99-144)||(30982038-30982084)
chr6 (99-144)||(30988202-30988248)
[»] chr7 (12 HSPs)
chr7 (59-170)||(19293954-19294067)
chr7 (59-148)||(40858799-40858889)
chr7 (59-179)||(5554996-5555117)
chr7 (59-179)||(29126599-29126720)
chr7 (59-150)||(1031467-1031559)
chr7 (59-179)||(15668927-15669049)
chr7 (59-179)||(19323457-19323578)
chr7 (61-179)||(18300191-18300310)
chr7 (59-144)||(38141476-38141562)
chr7 (69-179)||(5900475-5900586)
chr7 (59-144)||(25289382-25289468)
chr7 (91-179)||(29626183-29626271)
[»] chr5 (3 HSPs)
chr5 (59-148)||(26369712-26369802)
chr5 (59-179)||(40974014-40974135)
chr5 (91-148)||(22581169-22581227)
[»] chr4 (7 HSPs)
chr4 (59-148)||(47591232-47591322)
chr4 (87-170)||(9897255-9897339)
chr4 (91-150)||(23108550-23108610)
chr4 (90-148)||(48639998-48640057)
chr4 (91-144)||(30599010-30599064)
chr4 (59-148)||(43498540-43498630)
chr4 (59-147)||(37871427-37871516)
[»] chr1 (2 HSPs)
chr1 (59-147)||(34548599-34548688)
chr1 (61-148)||(26676134-26676222)
[»] chr8 (2 HSPs)
chr8 (59-145)||(9932876-9932963)
chr8 (66-147)||(13090555-13090637)
[»] scaffold0432 (1 HSPs)
scaffold0432 (59-179)||(8336-8457)
[»] chr2 (1 HSPs)
chr2 (59-150)||(27270891-27270983)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 28432077 - 28432232
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgatttttaactaatattgttttgcagcctactatttcaaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  28432077 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcgggagtgctgtgatttttaactaatattgttttgcagcctaatatttcaaa 28432176  T
Q  159 catgtggatttgacatttacacgcgtccatctaataaggaggtgccctaaaagtca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28432177 catgtggatttgacatttacacgcgtccatctaataaggaggtgccctaaaagtca 28432232  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 28431995 - 28432055
Alignment:
Q  2 atatttaggaacaattcttgctattataaaaatgacgacggtgaatgaaatgtatttgctt 62  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28431995 atatttagaaacaattcttgctattattaaaatgacaacggtgaatgaaatgtatttgctt 28432055  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 10437266 - 10437208
Alignment:
Q  91 ggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  10437266 ggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagccta 10437208  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 15029349 - 15029404
Alignment:
Q  94 ggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    ||||||||| |||||| |||| |||||| |||||||||||||||||||||| ||||    
T  15029349 ggaggagaaggtgcgggagtgttgtgatgttttaactaatattgttttgcaaccta 15029404  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 8753786 - 8753663
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtga-tttttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||||||||||| |||||| ||| |||||||||||| |||||| |||| ||| | ||||||||||||||| |||||||||||  ||||||      
T  8753786 gcttggaagtggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttgtaattttttaactaatattattttgcagcctcatatttctg 8753687  T
Q  158 acatgtggatttgacatttacacg 181  Q
    ||| ||||||||| || |||||||    
T  8753686 acaggtggatttggcacttacacg 8753663  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 7093159 - 7093280
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| |||| || || ||| ||| |||||||| ||| |||||| |||| |||||| ||||||||||||||||||||||| ||| |  |||      
T  7093159 gcttggaagtggcggcgtcggttgttagcttgggaggaggggaaggtgcgggagtgttgtgatattttaactaatattgttttgcagtctaatcattctg 7093258  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||| ||||||||    
T  7093259 acaggtggatttggcatttaca 7093280  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 12913117 - 12913028
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcct 147  Q
    |||||| ||||| |||| ||||| ||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||||    
T  12913117 gcttggcagtggcggcgtcgtttgttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagcct 12913028  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 30975645 - 30975599
Alignment:
Q  99 agaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcag 144  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  30975645 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcag 30975599  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 30982084 - 30982038
Alignment:
Q  99 agaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcag 144  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  30982084 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcag 30982038  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 30988248 - 30988202
Alignment:
Q  99 agaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcag 144  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  30988248 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcag 30988202  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 19293954 - 19294067
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtga--tttttaactaatattgttttgcagcctactatttca 156  Q
    |||||||||||||||||||| |||||| ||| |||||||||||| ||| || |||| |||||  |||||||||||||||||||||||||||  ||||||     
T  19293954 gcttggaagtggaggcgccgattattatcttgggaggaggagaaggtgtgggagtgttgtgatttttttaactaatattgttttgcagcctcatatttct 19294053  T
Q  157 aacatgtggatttg 170  Q
     ||| |||||||||    
T  19294054 gacaggtggatttg 19294067  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 40858889 - 40858799
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||||| |||| ||||| ||  ||| |||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  40858889 gcttggaagtggcggcgtcgtttgtttgcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagccta 40858799  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 5554996 - 5555117
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| |||| || || ||| ||| |||||||||||| |||||| |||| |||||| |||||||||||||||||| |||| ||| |  |||      
T  5554996 gcttggaagtggcggcgtcggttgttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgtttagcagtctaatcattctg 5555095  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||| ||||||||    
T  5555096 acaggtggatttggcatttaca 5555117  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 29126720 - 29126599
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| |||| || || |||  || |||||||||||| |||||| |||| |||||| ||||||||||||||||||||||| ||| |  |||      
T  29126720 gcttggaagtggcggcgtcggttgttacattgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagtctaatcattctg 29126621  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||| ||||||||    
T  29126620 acaggtggatttggcatttaca 29126599  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 1031467 - 1031559
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctact 150  Q
    |||||| |||||||||| ||||| ||  ||| |||||| |||||||||||| | || |||||| ||||| |||||||||||||||||||||||    
T  1031467 gcttggcagtggaggcgtcgtttgttggcttgggaggaagagaaagtgcgggaatgttgtgatattttatctaatattgttttgcagcctact 1031559  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 15668927 - 15669049
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtga--tttttaactaatattgttttgcagcctactatttca 156  Q
    |||||||||||| || | || || ||| ||| |||||||||||| |||||| |||| |||||  |||||||||||||||||||||||| ||| |  |||     
T  15668927 gcttggaagtggcggtgtcggttgttagcttgggaggaggagaaggtgcgggagtgttgtgatttttttaactaatattgttttgcagtctaatcattct 15669026  T
Q  157 aacatgtggatttgacatttaca 179  Q
     ||| ||||||||| ||||||||    
T  15669027 gacaggtggatttggcatttaca 15669049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 19323457 - 19323578
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| || | || || ||| ||| |||||||||||| |||||| |||| |||||| |||||||||||||| |||||||| ||| |  |||      
T  19323457 gcttggaagtggcggtgtcggttgttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattattttgcagtctaatcattctg 19323556  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||| ||||||||    
T  19323557 acaggtggatttggcatttaca 19323578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 18300310 - 18300191
Alignment:
Q  61 ttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgattt-ttaactaatattgttttgcagcctactatttcaaac 159  Q
    |||||||||| |||| || || ||| ||| ||||||||| || |||||| |||| |||||||| ||||||| ||||||||||||| ||| |  |||  ||    
T  18300310 ttggaagtggcggcgtcggttgttagcttgggaggaggaaaaggtgcgggagtgttgtgatttcttaactattattgttttgcagtctaatcattctgac 18300211  T
Q  160 atgtggatttgacatttaca 179  Q
    | ||||||||| ||||||||    
T  18300210 aggtggatttggcatttaca 18300191  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 38141476 - 38141562
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcag 144  Q
    |||||||||||| |||| || || ||| ||| |||||||| ||| |||| | |||| |||||| |||||||||||||||||||||||    
T  38141476 gcttggaagtggcggcgtcggttgttagcttgggaggaggggaaggtgcaggagtgttgtgatattttaactaatattgttttgcag 38141562  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 5900586 - 5900475
Alignment:
Q  69 ggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtga-tttttaactaatattgttttgcagcctactatttcaaacatgtggat 167  Q
    |||||||||| |||||| ||| |||||||||||| |||| | |||  | | | ||||||||||||||||||||||||| |  ||||||  ||| ||||||    
T  5900586 ggaggcgccgattattagcttgggaggaggagaaggtgcaggagtattataattttttaactaatattgttttgcagcttcatatttctgacaggtggat 5900487  T
Q  168 ttgacatttaca 179  Q
    || ||| |||||    
T  5900486 ttaacacttaca 5900475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 25289468 - 25289382
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcag 144  Q
    ||||||||||||  ||| ||||| ||  ||| |||||||||||| |||||| |||  ||| || |||||||||||||||||||||||    
T  25289468 gcttggaagtggcagcgtcgtttgtttgcttgggaggaggagaaggtgcgggagtattgtaatattttaactaatattgttttgcag 25289382  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 29626183 - 29626271
Alignment:
Q  91 ggaggaggagaaagtgcggcagtgctgtgatttttaactaatattgttttgcagcctactatttcaaacatgtggatttgacatttaca 179  Q
    |||||||| ||| |||||| |||| |||||| |||||||||||||||  ||||| ||| |  |||  ||| ||||||||| ||||||||    
T  29626183 ggaggaggggaaggtgcgggagtgttgtgatatttaactaatattgtaatgcagtctaatcattctgacaggtggatttggcatttaca 29626271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 26369802 - 26369712
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||||| |||| ||||| ||  ||| |||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  26369802 gcttggaagtggcggcgtcgtttgtttgcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagccta 26369712  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 40974135 - 40974014
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgattt-ttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| |||| || || ||| ||| |||||||||||| |||||| |||  |||||||| ||||||||||||||||||||| ||| |  |||      
T  40974135 gcttggaagtggcggcgtcggttgttagcttgggaggaggagaaggtgcgggagtattgtgatttcttaactaatattgttttgcagtctaatcattctg 40974036  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||||||||||||    
T  40974035 acaggtggatttgacatttaca 40974014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 22581227 - 22581169
Alignment:
Q  91 ggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||||| |||||| |||| |||||| |||||||||||||||||||||| ||||    
T  22581227 ggaggaggagaaggtgcgggagtgttgtgatgttttaactaatattgttttgcaaccta 22581169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 47591322 - 47591232
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||||| |||| ||||| ||  ||| |||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  47591322 gcttggaagtggcggcgtcgtttgtttgcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagccta 47591232  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 9897339 - 9897255
Alignment:
Q  87 cttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctactatttcaaacatgtggatttg 170  Q
    |||||||||| |||||||||| | | || |||||| ||||| |||||||||||||||||||||||| |||  ||| |||||||||    
T  9897339 cttaggaggaagagaaagtgctggaatgttgtgatattttatctaatattgttttgcagcctactaattctgacaggtggatttg 9897255  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 23108610 - 23108550
Alignment:
Q  91 ggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcctact 150  Q
    |||||||||||| |||||| |||| |||||| ||||| |||||||||||||||||||||||    
T  23108610 ggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagcctact 23108550  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 48639998 - 48640057
Alignment:
Q  90 aggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    ||||||||||||| |||||| |||| |||||| |||||||||||||||||||||| ||||    
T  48639998 aggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcacccta 48640057  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 30599064 - 30599010
Alignment:
Q  91 ggaggaggagaaagtgcggcagtgctgtgattttt-aactaatattgttttgcag 144  Q
    |||||||||||| |||||| |||| |||||||||| |||||||||||||||||||    
T  30599064 ggaggaggagaaggtgcgggagtgttgtgattttttaactaatattgttttgcag 30599010  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 43498540 - 43498630
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||| ||||| |||| ||||| ||  ||| |||||| |||||||||| | | || |||||| ||||| |||||||||||||||||||||    
T  43498540 gcttggcagtggcggcgacgtttgttggcttgggaggaagagaaagtgcaggaatgttgtgatattttatctaatattgttttgcagccta 43498630  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 37871516 - 37871427
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcct 147  Q
    |||||| ||||| || | ||||| ||| ||| |||| ||||||| |||| | |||| |||||| ||||| ||||||||||||||||||||    
T  37871516 gcttggcagtggcggagtcgtttgttagcttgggagaaggagaaggtgcaggagtgttgtgatattttatctaatattgttttgcagcct 37871427  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 34548599 - 34548688
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcct 147  Q
    |||||| ||||| |||| ||||| ||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||||    
T  34548599 gcttggcagtggcggcgtcgtttgttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagcct 34548688  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 26676134 - 26676222
Alignment:
Q  61 ttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagccta 148  Q
    |||||||||| |||| ||||| ||  ||| |||||||||||| |||| | |||| |||||| |||||||||||||||||||||||||||    
T  26676134 ttggaagtggcggcgtcgtttgtttgcttgggaggaggagaaggtgctggagtgttgtgatattttaactaatattgttttgcagccta 26676222  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 9932963 - 9932876
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagc 145  Q
    |||||||||||| |||| ||||| ||  ||| ||||||||| || |||||| |||| |||||| ||||||||||||||||||||||||    
T  9932963 gcttggaagtggcggcgtcgtttgtttgcttgggaggaggataaggtgcgggagtgttgtgatattttaactaatattgttttgcagc 9932876  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 13090637 - 13090555
Alignment:
Q  66 agtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgat-ttttaactaatattgttttgcagcct 147  Q
    ||||| |||| ||||| ||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||||    
T  13090637 agtggcggcgtcgtttgttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagcct 13090555  T

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Target: scaffold0432 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 8336 - 8457
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgattt-ttaactaatattgttttgcagcctactatttcaa 157  Q
    |||||||||||| |||  || || ||| ||||||| ||||||||  ||||| |||| |||||||| ||||||||||||||||||||| ||| |  |||      
T  8336 gcttggaagtggcggcatcggttgttagcttaggatgaggagaagttgcgggagtgttgtgatttcttaactaatattgttttgcagtctaatcattctg 8435  T
Q  158 acatgtggatttgacatttaca 179  Q
    ||| ||||||||| ||||||||    
T  8436 acaggtggatttggcatttaca 8457  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 27270891 - 27270983
Alignment:
Q  59 gcttggaagtggaggcgccgtttattaacttaggaggaggagaaagtgcggcagtgctgtgatttttaa-ctaatattgttttgcagcctact 150  Q
    |||||| ||||| |||| ||||| ||  | |||||||| ||||||||| || | || |||||||||| | ||| |||||||||||||||||||    
T  27270891 gcttggtagtggcggcgtcgtttgttggcctaggaggaagagaaagtgtgggaatgttgtgattttttatctattattgttttgcagcctact 27270983  T

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