View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_high_1 (Length: 580)
Name: NF8402_high_1
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Complemental strand, 27298183 - 27297633
Alignment:
| Q |
18 |
attaggagcataaataatttgttatctttctctcttattatgtttggaatgtagctctagtgttggtaatatatgccgtcaaataaagttcacaaggaca |
117 |
Q |
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| T |
27298183 |
attaggagcataaataatttgttatctttctctcttattatgtttggaatgtagctctagtgttggtaatatatgccgtcaaataaagttcacaaggaca |
27298084 |
T |
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| Q |
118 |
ttgattgaaagctaagtagtgagaaatacaataactgaaggnnnnnnnnn---tactataacaaaccaaagatgtgggacctacttgataaatgattcta |
214 |
Q |
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| T |
27298083 |
ttgattgaaagctaagtagtgagaaatacaataactgaagaagaaaaaaaaaatactagaacaaaccaaagatgtgggacctacttgataaatgattcta |
27297984 |
T |
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| Q |
215 |
gttaagacagttaggtcacgattccaacagtaatttaatttctataagactataatacactcatatgtgcactttgtttgtcttatatcnnnnnnntaag |
314 |
Q |
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| T |
27297983 |
gttaagacagttaggtcacgattccaacagtaatttaatttctataagactataatacactcatatgtgcactttgtttgtcttatatcaaaaaaataag |
27297884 |
T |
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| Q |
315 |
attttaagtatctgtttttctcaatatttgttactttaaaatattaataaaactatttgttgtattttaatgtatctaataattattccactaaattatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27297883 |
attttaagtatctgtttttctcaatatttgttactttaaaatattaataaaactatttgttgtattttaatgtatctaataattactccactaaattatt |
27297784 |
T |
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| Q |
415 |
ttatgagtaagaatatttttgtcaatgaacctcattctatcatagaaaatagtatacttaatgatgttcttaataataaaaagtgtgcataaccctaaat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27297783 |
ttatgagtaagaatatttttgtcaatgaacctcattctatcatagaaaatagtatacttaatgatgttcttaataataaaaagtgtgcataaccctaaat |
27297684 |
T |
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| Q |
515 |
tacttaatataatacggtggatgcattacttatctttcaactaaatttcat |
565 |
Q |
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| T |
27297683 |
tacttaatataatacggtggatgcattacttatctttcaactaaatttcat |
27297633 |
T |
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