View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_high_13 (Length: 239)
Name: NF8402_high_13
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1940868 - 1940645
Alignment:
| Q |
1 |
tctgtttttactctgttttcttatttttgtgttaatgagctaattaaagtgacattgttgtgacagatctctgttcctgcgcaaattacggctaaaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1940868 |
tctgtttttactctgttttcttatttttgtgttaatgagctaattgaagtgacattgttgtgacagatctctgttcctgcgcaaattacggctaaaattg |
1940769 |
T |
|
| Q |
101 |
agcagacccatttgacggcattaaggtgtgtgtccaaatttttgttcttttctgtttgattgctgttgaatttgcttatttaatgttaattgaggtgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1940768 |
agcagacccatttgacggcattaaggtgtgtgtccaaatttttgttcttttctgtttgattgctgttgaatttgcttatttaatgttaattgaggtgttt |
1940669 |
T |
|
| Q |
201 |
ttagtggttattaagtttgaatct |
224 |
Q |
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|||||||||||||||||||||||| |
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|
| T |
1940668 |
ttagtggttattaagtttgaatct |
1940645 |
T |
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