View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8402_high_14 (Length: 229)

Name: NF8402_high_14
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8402_high_14
NF8402_high_14
[»] chr2 (3 HSPs)
chr2 (11-212)||(8516678-8516879)
chr2 (89-212)||(21691192-21691315)
chr2 (11-78)||(21691087-21691154)
[»] chr7 (2 HSPs)
chr7 (89-212)||(35937594-35937717)
chr7 (11-78)||(35937755-35937822)
[»] chr4 (1 HSPs)
chr4 (89-212)||(40704231-40704354)
[»] chr1 (6 HSPs)
chr1 (89-212)||(26626749-26626872)
chr1 (89-212)||(49117248-49117371)
chr1 (11-68)||(15821787-15821844)
chr1 (11-78)||(26626910-26626977)
chr1 (11-78)||(49117143-49117210)
chr1 (106-211)||(15821615-15821720)
[»] chr8 (1 HSPs)
chr8 (110-211)||(17606296-17606397)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 8516879 - 8516678
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattattatggtgttttaaaacttgtagatgttcccaaggctcttctcg 110  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8516879 ttggagttagagatagccaattacaaacaaggtaacttgtttgttccagagtattattatggtgttttaaaacttgtagatgttcccaaggctcctctcg 8516780  T
Q  111 cggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtcagaggtgctttgttgaagaggaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8516779 cggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtcagaggtgctttgttgaagaggaa 8516680  T
Q  211 tc 212  Q
    ||    
T  8516679 tc 8516678  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 21691192 - 21691315
Alignment:
Q  89 gatgttcccaaggctcttctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca 188  Q
    |||||||||||||||  ||| ||||  || ||||||||| ||||||| || ||| | ||||||||||||| |||||| ||||  ||||||||||| ||      
T  21691192 gatgttcccaaggcttctctggcggttgttcaagaggtccacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgaggtagttt 21691291  T
Q  189 gaggtgctttgttgaagaggaatc 212  Q
    ||||||||||| |||| |||||||    
T  21691292 gaggtgctttgctgaataggaatc 21691315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 21691087 - 21691154
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattattatggtgtttt 78  Q
    |||| ||||||||||  |||||||||||||||||| |||| ||||| ||||| ||||| |||| ||||    
T  21691087 ttggagttagagataaccaattacaaacaaggtaatttgtctgttcaagagttttattctggtttttt 21691154  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 35937717 - 35937594
Alignment:
Q  89 gatgttcccaaggctcttctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca 188  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||| || ||| | ||||||||||||| |||||| ||||  ||||||||||| || |    
T  35937717 gatgttcccaaggcttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgaggtagtta 35937618  T
Q  189 gaggtgctttgttgaagaggaatc 212  Q
    ||||||||||| |||| |||||||    
T  35937617 gaggtgctttgctgaataggaatc 35937594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 35937822 - 35937755
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattattatggtgtttt 78  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||| ||||    
T  35937822 ttggagttagagatagccaattacaaacaaggtaacttgtctgttcaagagttttattctggtttttt 35937755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 40704231 - 40704354
Alignment:
Q  89 gatgttcccaaggctcttctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca 188  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||| || ||| | ||||||||||||| |||||| ||||  ||||||||||| || |    
T  40704231 gatgttcccaaggcttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgaggtagtta 40704330  T
Q  189 gaggtgctttgttgaagaggaatc 212  Q
    ||||||||||| |||| |||||||    
T  40704331 gaggtgctttgctgaataggaatc 40704354  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 26626872 - 26626749
Alignment:
Q  89 gatgttcccaaggctcttctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca 188  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||| || ||| | ||||||||||||| |||||| ||||  ||||||||||| || |    
T  26626872 gatgttcccaaggcttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgaggtagtta 26626773  T
Q  189 gaggtgctttgttgaagaggaatc 212  Q
    ||||||||||| |||| |||||||    
T  26626772 gaggtgctttgctgaataggaatc 26626749  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 49117248 - 49117371
Alignment:
Q  89 gatgttcccaaggctcttctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca 188  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||| || ||| | ||||||||||||| |||||| ||||  ||||||||||| || |    
T  49117248 gatgttcccaaggcttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgaggtagtta 49117347  T
Q  189 gaggtgctttgttgaagaggaatc 212  Q
    ||||||||||| |||| |||||||    
T  49117348 gaggtgctttgctgaataggaatc 49117371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 15821844 - 15821787
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattatt 68  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  15821844 ttggagttagagatagtcaattacaaacaaggtaatttgtctgttcaagagtattatt 15821787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 26626977 - 26626910
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattattatggtgtttt 78  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||| ||||    
T  26626977 ttggagttagagatagccaattacaaacaaggtaacttgtatgttcaagagttttattctggtttttt 26626910  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 49117143 - 49117210
Alignment:
Q  11 ttggtgttagagatagtcaattacaaacaaggtaacttgtttgttccagagtattattatggtgtttt 78  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||| ||||    
T  49117143 ttggagttagagatagccaattacaaacaaggtaacttgtatgttcaagagttttattctggtttttt 49117210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 15821720 - 15821615
Alignment:
Q  106 tctcgcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtcagaggtgctttgttgaag 205  Q
    ||||||||  ||||||||||||||||| || || ||| | ||||||||||||| |||||| | ||  ||||||||||| || |||| ||| ||| ||||     
T  15821720 tctcgcggatgtccaagaggtctacaatactagtaggcgcgatcaatttctcatgaagcttcatccggaatttgaggtagttagagttgcattgctgaat 15821621  T
Q  206 aggaat 211  Q
    ||||||    
T  15821620 aggaat 15821615  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 17606397 - 17606296
Alignment:
Q  110 gcggcagtccaagaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtcagaggtgctttgttgaagagga 209  Q
    ||||| ||||||||||| |||||||| || |    |||||||||||||| ||  ||||| |  |||||||||||||| |||||| ||||| |||| ||||    
T  17606397 gcggctgtccaagaggtttacaacactagtaaacaggatcaatttctcatgatactccgccctgaatttgaggttgttagaggttctttgctgaatagga 17606298  T
Q  210 at 211  Q
    ||    
T  17606297 at 17606296  T

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