View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8402_high_2 (Length: 565)
Name: NF8402_high_2
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Complemental strand, 21484166 - 21483640
Alignment:
| Q |
18 |
acatcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21484166 |
acatcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggt |
21484067 |
T |
|
| Q |
118 |
gtaaatggggaagagagtattcaaggagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21484066 |
gtaaatggggaagagagtattcaaggagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaaca |
21483967 |
T |
|
| Q |
218 |
aagacagtgtctccgcgaatgatttgaggaatgtgaagcttaagaaatcgacgatcgaaagtgctgctaggagattaggtggtggaaaagaagggatgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483966 |
aagacagtgtctccgcgaatgatttgaggaatgtgaagcttaagaaatcaacgattgaaagtgctgctaggagattaggtggtggaaaagaagggatgaa |
21483867 |
T |
|
| Q |
318 |
acaattgttgaagctcattcttgaatgggttcaaactagtcatcttcacaacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483866 |
acaattgttgaagctcattcttgaatgggttcaaactagtcatcttcataacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaat |
21483767 |
T |
|
| Q |
418 |
attgttcctcaacaacaacattttcaagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacacgtgtttcaaccaaacatcat |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
21483766 |
attgttcctcaacaacatcattttcaagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacgcatgtttcaaccaaacatcat |
21483667 |
T |
|
| Q |
518 |
ggctagatcaaacacctctcattgtac |
544 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21483666 |
ggctagatcaaacacctctcattgtac |
21483640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 26551593 - 26551516
Alignment:
| Q |
18 |
acatcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacga |
95 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
26551593 |
acatcaacaaatttcaatgatagtgcatgatgaaagggaaaataaaccacaacaagtgaatattgaggaaaataacga |
26551516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University