View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_high_4 (Length: 437)
Name: NF8402_high_4
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Original strand, 14469067 - 14469486
Alignment:
| Q |
5 |
aatgatatttcatatatggatgcaattgtatacactattgatatgattgtagattc--ctaaagcctctgatatttctctcttaaaatcctacaaattac |
102 |
Q |
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| T |
14469067 |
aatgatatttcatatacggatgcaattgtatacactattgatgtgattgttgatatatctaaagcctctgatatttctctcttaaaatcctacaaattac |
14469166 |
T |
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| Q |
103 |
agaaattgttggtataaatgtgagggaaaatgcagtatttatatagaatttacatttacaaaggtgaaggggagtcatctaattgaaatgaatggcctat |
202 |
Q |
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| T |
14469167 |
agaaattgttggtataaatgtgagggaaaatgcagtatttatatagaatttacatttacaaaggtgaaggggagtcatctaattgaaatgaatggcctat |
14469266 |
T |
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| Q |
203 |
atcacaagacatactctctttaaattcaacagggaagagagtaaaacattatgtgctagtgatgaatttcattaggcattgttggaagcttctttctaaa |
302 |
Q |
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| T |
14469267 |
atcacaagacatactctctttaaattcaacagggaagagagtaaaacattatgtgctagtgatgaatttcattaggcattgttggaagcttctttctaaa |
14469366 |
T |
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| Q |
303 |
tacgtgtttcctgcagcgtttgaaaatactgtcatagatcaagtcaaactgtactcctgctctctcgcgattaataatgaacaggacatgatcaccctcc |
402 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
14469367 |
tacgtgtttcctgcagcgttcgaaaatactgtcatagatcaagtcaaactgtactcctgctctctcgcggttaataatgaacaagacatgatcaccctcc |
14469466 |
T |
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| Q |
403 |
acgtatttgtagtacctgtt |
422 |
Q |
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| T |
14469467 |
acatatttgtagtacctgtt |
14469486 |
T |
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