View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8402_high_6 (Length: 391)
Name: NF8402_high_6
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_high_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 35 - 391
Target Start/End: Complemental strand, 45460010 - 45459654
Alignment:
| Q |
35 |
agataatactggtgctggagcttccacaggtgatattgccggccctggagctggagcttcatctggtacgtctactggagctggagctgcagctggtacg |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45460010 |
agataatactggtgctggagtttccacaggtgatattgccggccctggagctggagcttcaactggtacggctactggagctggagctgcagctggtacg |
45459911 |
T |
|
| Q |
135 |
gctactggagctggagctgctaccggcactggggactttactggtaccgaaactggagtagctattggcaccggtgaaactactggaactggcgatacca |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459910 |
gctactggagctggagctgctaccggcactggggactttactggtaccggaactggagtagctattggcaccggtgaaactactggaactggcgatacca |
45459811 |
T |
|
| Q |
235 |
caggcataggcactggaactataactggtgctgcaactggcactggtgataccactggcacaggagctggaataggtgaaacaacaggagccggagaagg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459810 |
caggcataggcactggaactataactggtgctgcaactggcactggtgataccactggcacaggagctggaataggtgaaacaacaggagccggagaagg |
45459711 |
T |
|
| Q |
335 |
agcatgtgatgtggcattggaggaagcaagcaaagatggtggcaaaatgacagtgct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45459710 |
agcatgtgatgtggcattggaggaagcaagcaaagatggtggcaaaatgacagtgct |
45459654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University