View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_low_11 (Length: 334)
Name: NF8402_low_11
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 734521 - 734204
Alignment:
| Q |
1 |
gaaatgaaatggcagaaagaatggcttattttggactttctgttaacatggtagcctttatgttttatgtgatgcatagaccttttgcaagttcatccaa |
100 |
Q |
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| T |
734521 |
gaaatgaaatggcagaaagaatggcttattttggactttctgttaacatggtagcctttatgttttatgtgatgcatagaccttttgcaagttcatccaa |
734422 |
T |
|
| Q |
101 |
tgcagtcaataatttcttaggaatatcacaagcttcttctgttcttggtggatttctagctgatgcataccttggacgttactggacaatagctatattc |
200 |
Q |
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| T |
734421 |
tgcagtcaataatttcttaggaatatcacaagcttcttctgttcttggtggatttctagctgatgcataccttggacgttactggacaatagctatattc |
734322 |
T |
|
| Q |
201 |
actacaatttatctcgtggtacgaatcattccctttcgatttgagttgtgagatcaagattgaatgtctaaagtttcgacttaagagttaataaatagat |
300 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734321 |
actacaatttatctcgcggtacggttcattccctttcgatttgagttgtgagatcaagattgaatgtctaaagtttcgacttaagagttaataaatagat |
734222 |
T |
|
| Q |
301 |
tggtttaaaattgtaagt |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
734221 |
tggtttaaaattgtaagt |
734204 |
T |
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