View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_low_13 (Length: 283)
Name: NF8402_low_13
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 13271017 - 13271281
Alignment:
| Q |
1 |
aagagaatgattctataaatataagggtttggtgagattaatatatcttaatgaaggatttaaaaatggttagaagaaaactttaaagccacgagttgaa |
100 |
Q |
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| T |
13271017 |
aagagaatgattctataaatataagggtttggtgagattaatatatcttaatgaaggatttaaaaatggttagaagaaaactttaaagccacgagttgaa |
13271116 |
T |
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| Q |
101 |
gcaaaggcttaacctcaatagttaggtgtttgcgtgaagcaagcatgaaataagctctctcttagttagcactatttctctctcaacacattttgttctt |
200 |
Q |
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| T |
13271117 |
gcaaaggcttaacctcaatagttaggtgtttgcgtgaagcaagcatgaaataagctctctcttagttagcactatttctctctcaacacattttgttctt |
13271216 |
T |
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| Q |
201 |
gatcttttgccttattccattcatcatcctttgaaactcattttaacactatctaggttgtgttgt |
266 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13271217 |
gatcttttgccttatt-cattcatcatcctttgaaactcattttaacactatctaggttgtgttgt |
13271281 |
T |
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