View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8402_low_6 (Length: 401)

Name: NF8402_low_6
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8402_low_6
NF8402_low_6
[»] chr7 (2 HSPs)
chr7 (16-390)||(28194865-28195238)
chr7 (316-378)||(478151-478213)
[»] chr5 (2 HSPs)
chr5 (317-378)||(408067-408128)
chr5 (317-375)||(41485249-41485307)
[»] chr2 (2 HSPs)
chr2 (317-378)||(13693922-13693983)
chr2 (316-378)||(41454375-41454437)
[»] scaffold0215 (1 HSPs)
scaffold0215 (318-365)||(24978-25025)
[»] chr4 (1 HSPs)
chr4 (319-368)||(44203873-44203922)
[»] chr3 (1 HSPs)
chr3 (317-361)||(28048324-28048368)
[»] chr1 (1 HSPs)
chr1 (317-365)||(12429125-12429173)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 28194865 - 28195238
Alignment:
Q  16 accaacaaggtacatcctcccatgacagtcatatagtacaaataaattcaaaataatttgagtgtttcaaaacttcaacagaagttgtgtgaaacaaatc 115  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28194865 accaacaaggtacatcctcctatgacagtcatatagtacaaagaaattcaaaataatttgagtgtttcaaaacttcgacagaagttgtgtgaaacaaatc 28194964  T
Q  116 tcaactttgcccatataggtacttgatactgcagacaatcaggtccaagataaatgcacctccagggagaggcaaatggtagaattaggcgtggcttgac 215  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28194965 tcaattttaccc-tataggtacttgatactgcagacaatcaggtccaagataaatgcacctccagggagaggcaaatggtagaattaggcgtggcttgac 28195063  T
Q  216 attgatttggcacttcatatcgtgggccatttggggctcagaagtgattgctatattctctaaagaaggagccaggtttctacgagctggtgggtctcat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28195064 attgatttggcacttcatatcgtgggccatttggggctcagaagtggttgctatattatctaaagaaggagccaggtttctacgagctggtgggtctcat 28195163  T
Q  316 gctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggtactcatagcacttcat 390  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  28195164 gctctgaagcatgggtacttgtaaaaaggtgaagtactcgtaccgggtacgcatacggtactcgtagcacttcat 28195238  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 478213 - 478151
Alignment:
Q  316 gctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggtactc 378  Q
    |||||||||| || |  |||||||||||||||| ||| |||||||||||| ||||||||||||    
T  478213 gctctgaagcctgagcgcttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactc 478151  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 408067 - 408128
Alignment:
Q  317 ctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggtactc 378  Q
    ||||||||||||||||||||||||| |||||| |||  |||| |||||||| ||||||||||    
T  408067 ctctgaagcatgggtacttgtaaaacggtgaagtaccggtactgggtacgcgtacggtactc 408128  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 41485307 - 41485249
Alignment:
Q  317 ctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggta 375  Q
    |||| ||||||| |||||||||||| | |||| ||| |||||||||||||| |||||||    
T  41485307 ctctaaagcatgtgtacttgtaaaatgatgaagtacccgtaccgggtacgcgtacggta 41485249  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 13693983 - 13693922
Alignment:
Q  317 ctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggtactc 378  Q
    ||||||||||||| ||||||||||| |||||| ||| |||| |||||||| |||||||||||    
T  13693983 ctctgaagcatggatacttgtaaaacggtgaagtacccgtatcgggtacggatacggtactc 13693922  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 41454375 - 41454437
Alignment:
Q  316 gctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgcatacggtactc 378  Q
    ||||| |||||||||||||||||||| | |||| ||| |||| ||||||||| ||||||||||    
T  41454375 gctctaaagcatgggtacttgtaaaacgatgaagtacccgtatcgggtacgcgtacggtactc 41454437  T

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Target: scaffold0215 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 25025 - 24978
Alignment:
Q  318 tctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtac 365  Q
    ||||||| |||||||||||||||| |||||| |||||||| |||||||    
T  25025 tctgaagtatgggtacttgtaaaatggtgaagtactcgtatcgggtac 24978  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 44203922 - 44203873
Alignment:
Q  319 ctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtacgca 368  Q
    |||||||| |||||||||||||| |||||| ||| ||||| |||||||||    
T  44203922 ctgaagcacgggtacttgtaaaatggtgaagtacccgtactgggtacgca 44203873  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 28048324 - 28048368
Alignment:
Q  317 ctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgg 361  Q
    ||||||||||||||||||| ||||||||| || ||| ||||||||    
T  28048324 ctctgaagcatgggtacttctaaaaaggtaaagtacccgtaccgg 28048368  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 12429125 - 12429173
Alignment:
Q  317 ctctgaagcatgggtacttgtaaaaaggtgaaatactcgtaccgggtac 365  Q
    |||||||||||| ||||| ||||||| ||||| ||| ||||||||||||    
T  12429125 ctctgaagcatgagtactcgtaaaaatgtgaagtacccgtaccgggtac 12429173  T

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