View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8402_low_7 (Length: 391)
Name: NF8402_low_7
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8402_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 35 - 391
Target Start/End: Complemental strand, 45460010 - 45459654
Alignment:
| Q |
35 |
agataatactggtgctggagcttccacaggtgatattgccggccctggagctggagcttcatctggtacgtctactggagctggagctgcagctggtacg |
134 |
Q |
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| T |
45460010 |
agataatactggtgctggagtttccacaggtgatattgccggccctggagctggagcttcaactggtacggctactggagctggagctgcagctggtacg |
45459911 |
T |
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| Q |
135 |
gctactggagctggagctgctaccggcactggggactttactggtaccgaaactggagtagctattggcaccggtgaaactactggaactggcgatacca |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459910 |
gctactggagctggagctgctaccggcactggggactttactggtaccggaactggagtagctattggcaccggtgaaactactggaactggcgatacca |
45459811 |
T |
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| Q |
235 |
caggcataggcactggaactataactggtgctgcaactggcactggtgataccactggcacaggagctggaataggtgaaacaacaggagccggagaagg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459810 |
caggcataggcactggaactataactggtgctgcaactggcactggtgataccactggcacaggagctggaataggtgaaacaacaggagccggagaagg |
45459711 |
T |
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| Q |
335 |
agcatgtgatgtggcattggaggaagcaagcaaagatggtggcaaaatgacagtgct |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459710 |
agcatgtgatgtggcattggaggaagcaagcaaagatggtggcaaaatgacagtgct |
45459654 |
T |
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