View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8402_low_9 (Length: 360)

Name: NF8402_low_9
Description: NF8402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8402_low_9
NF8402_low_9
[»] chr2 (1 HSPs)
chr2 (11-360)||(1940850-1941199)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 1941199 - 1940850
Alignment:
Q  11 ttattctactgtaaaaaacaaaacactatataataatccttaaaccttggtttctccgtctttcttggagaaaacctattccatgttgtttaccaacatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1941199 ttattctactgtaaaaaacaaaacactatataataatccttaaaccttggtttctccgtctttcttggagaaaacctattccatgttgtttaccaacatt 1941100  T
Q  111 actaactttatcnnnnnnnnnnnnnnntctttataatttttgattaattaatcaattaattaatgaattgatcacaattaccaactatgtttataactct 210  Q
    ||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1941099 actaactttatccacacacacacacactctttataatttttgattaattaatcaattaattaatgaattgatcacaattaccaactatgtttataactct 1941000  T
Q  211 ttcattcatttcactattttcatttgagttcttcaatggcaattccttcttcaatctctgatccatttgcttcaaagtttctacctttatcttcttccag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940999 ttcattcatttcactattttcatttgagttcttcaatggcaattccttcttcaatctctgatccatttgcttcaaagtttctacctttatcttcttccag 1940900  T
Q  311 ttataacccatcaagggtatgcattcattcctctgtttttactctgtttt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940899 ttataacccatcaagggtatgcattcattcctctgtttttactctgtttt 1940850  T

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