View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_11 (Length: 428)
Name: NF8403_high_11
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 42844449 - 42844033
Alignment:
| Q |
1 |
accaatatgaaaaactaaaaagaaacctaagacctatnnnnnnnn------gagacacgactcagtgcaaccttagaagaccgccgctaacgcctgtaaa |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42844449 |
accaatatgaaaaactaaaaagaaacctaagacctataaaaaaaaaaaaaagagacacgactcaatgcaaccttagaagaccgccgctaacgcctgtaaa |
42844350 |
T |
|
| Q |
95 |
tcattaaatgcttgaagaagttcataatatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttctcctcagccacatctg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42844349 |
tcattaaatgcttgaagaagttcataatatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttctcctcggccacatctg |
42844250 |
T |
|
| Q |
195 |
aaatcacaccattctgtcttgtcacctctttttcaagttcttccactctcagtttcaatttatcaacttcattcagtgcagattcatattcgaccaccag |
294 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42844249 |
aaatcacaccattctgtctagtcacctctttttcaagttcttccactctcagtttcaatttatcaacttcattcagtgcagattcatattcgaccaccag |
42844150 |
T |
|
| Q |
295 |
cgtcctcaatgatgcatttgtctcgtgaatatattccctcttctttaatattttagcatcgcgggagcatatctttgccttaaggttatcaatcttggca |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42844149 |
cgtcctcaatgatgcatttgtctcgtgaatatattccctcttctttaatattttagcatcgcgggagcatatctttgccttaaggttatcaatcttggca |
42844050 |
T |
|
| Q |
395 |
tccaaatcatctctttc |
411 |
Q |
| |
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||||||||||||||||| |
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| T |
42844049 |
tccaaatcatctctttc |
42844033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 224 - 411
Target Start/End: Original strand, 7363381 - 7363568
Alignment:
| Q |
224 |
ttttcaagttcttccactctcagtttcaatttatcaacttcattcagtgcagattcatattcgaccaccagcgtcctcaatgatgcatttgtctcgtgaa |
323 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
7363381 |
ttttcaagttcttccactctcagtttcaatttatcgactttattcagtgcagattcatattcgaccaccaacgccctcaatgatgcatttgactcgtgaa |
7363480 |
T |
|
| Q |
324 |
tatattccctcttctttaatattttagcatcgcgggagcatatctttgccttaaggttatcaatcttggcatccaaatcatctctttc |
411 |
Q |
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|||||| | |||| |||| |||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
7363481 |
tatatttcttcttttttattattttagagttgcgggagcatatcttaactttaaggttatcaatcttggcatccaaatcatctctttc |
7363568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 7363295 - 7363366
Alignment:
| Q |
47 |
agacacgactcagtgcaaccttagaagaccgccgctaacgcctgtaaatcattaaatgcttgaagaagttca |
118 |
Q |
| |
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|||||| ||||| || |||||||||| ||| || ||||| |||||||||||||||||| |||||||||||| |
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| T |
7363295 |
agacacaactcaatgtaaccttagaaaaccaccactaacacctgtaaatcattaaatgtctgaagaagttca |
7363366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 12628839 - 12628714
Alignment:
| Q |
121 |
atatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttctcctcagccacatctgaaatcacaccattctgtcttgtcacc |
220 |
Q |
| |
|
|||||||||| |||||| |||||| ||| | | || |||||||||||||||| |||||||||||||| |||||| ||||||||||||||| | || ||| |
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| T |
12628839 |
atatcgactcctatagtactcaagggaaaagcataattgtctaattgcctccctcttctcctcagccctatctgagatcacaccattctgtttagttacc |
12628740 |
T |
|
| Q |
221 |
tctttttcaagttcttccactctcag |
246 |
Q |
| |
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||||||||||||||| |||||||||| |
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| T |
12628739 |
tctttttcaagttctcccactctcag |
12628714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 12622913 - 12622789
Alignment:
| Q |
121 |
atatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttctcctcagccacatctgaaatcacaccattctgtcttgtcacc |
220 |
Q |
| |
|
|||| ||||| |||| || |||| ||| ||||||||||||||||||||||| |||||||||||||| ||| || |||||||| ||||| || || ||| |
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| T |
12622913 |
atatagactcctataatgatcaacagaaaaacttagttgtctaattgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacc |
12622814 |
T |
|
| Q |
221 |
tctttttcaagttcttccactctca |
245 |
Q |
| |
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||||| ||||||| ||||||||| |
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| T |
12622813 |
tctttactaagttctcccactctca |
12622789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 30923774 - 30923862
Alignment:
| Q |
164 |
attgcctccttcttctcctcagccacatctgaaatcacaccattctgtcttgtcacctctttttcaagttcttccactctcagtttcaa |
252 |
Q |
| |
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||||||||| ||||||| ||| || ||| || |||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
30923774 |
attgcctccctcttctcttcatcccgatcggagatcacaacattctgtctagtcacctctttttcaagttcttctactttcagtttcaa |
30923862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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