View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_15 (Length: 416)
Name: NF8403_high_15
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 39938399 - 39937999
Alignment:
| Q |
1 |
gattcacaggtcattgatgaataaaacagctataaactattttcatgatataagtatctaacattattttgtaaaaacaagtatacaacattacatttac |
100 |
Q |
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| T |
39938399 |
gattcacaggtcattgatgaataaaacagctataaactattttcatgatataagtatctaacattattttgtaaaaacaagtatacaacattacatttac |
39938300 |
T |
|
| Q |
101 |
atacatataatcgattgacactttatcctatgataagtgtacccattttattttgtaaacagaataatgtaaatgagggaagagaaaaaactaagttaca |
200 |
Q |
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| T |
39938299 |
atacatataatcgattgacactttatcctatgataagtgtacccattttattttgtaaacagaataatgtaaatgagggaagagaaaaaactaagttaca |
39938200 |
T |
|
| Q |
201 |
acagtttacatgttagcagtgtagtatagattagcttgcaactgagaattgttaaaaagttcgttccgtcacactacaaaacttggcatactgtattagg |
300 |
Q |
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| T |
39938199 |
acagtttacatgttagcagtgtagtatagattagcttgcaactgagaactgttaaaaagttcgttccgtcacactacaaaacttggcatactgtattagg |
39938100 |
T |
|
| Q |
301 |
agtggcagaaaatataacctgcaatgcacgcaagtccattattaattattcatagttatccatgttttgtgaaatatagcttattcgggacttacaataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39938099 |
agtggcagaaaatataacctgcaatgcacgcaagtccattattaattattcatagttatccatgttttgtgaaatatagcttgttcgggacttacaataa |
39938000 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
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| |
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| T |
39937999 |
t |
39937999 |
T |
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