View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8403_high_17 (Length: 401)
Name: NF8403_high_17
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 34 - 383
Target Start/End: Complemental strand, 1428818 - 1428469
Alignment:
| Q |
34 |
gcacgtcattctcatccttggttcgagcgaaagaaacaaagtcattcaatcattatcaaactgaattcctatccgcgagtattctagggagcgcttccta |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1428818 |
gcacgtcattctcatccttggttcgagcgaaagaaacaaagtcattcaatcattatcaaactgaattcctatccgcgagtattctagggagcgcttccta |
1428719 |
T |
|
| Q |
134 |
cttctaataggtcatgaactagatcataaaacaatatgggacacctaaatttgacaactttttacgtggtaagtgtagttcacacacatggtgaatcatg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1428718 |
cttctaataggtcatgaactagatcataaaacaatatgtgacacctaaatttgacaactttttacgtggttagtgtagttcacacacatggtgaatcatg |
1428619 |
T |
|
| Q |
234 |
tgcaaatttaaggttaatgaagttcagtagatggttaataagttgtgacacccgatatatctattaaccgaatctagcgcttaattaactacatgtgcga |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1428618 |
tgcaaatttaaggttaatgaagttcagtagatggttaataagttgtgacacccgatatatctattaaccgaatctagcgcttaattaaccacgtgtgcga |
1428519 |
T |
|
| Q |
334 |
actacgtgatccatttaaaaagttgttgaattttgatttctcaaaatgat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1428518 |
actacgtgatccatttaaaaagttgttgaattttgatttctcaaaatgat |
1428469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 11510313 - 11510361
Alignment:
| Q |
254 |
agttcagtagatggttaataagttgtgacacccgatatatctattaacc |
302 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
11510313 |
agttcagtagatggttaatagcttgtgacacctgatatatctattaacc |
11510361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 37539279 - 37539370
Alignment:
| Q |
287 |
gatatatctattaaccgaatctagcgcttaattaactacatgtgcgaactacgtgatccatttaaaaagttgttgaattttgatttctcaaa |
378 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || ||| ||||||||||||| ||| | |||| |||||| |||| ||||||| || ||||||| |
|
|
| T |
37539279 |
gatatatctattaaccaaatctaacacttcatgaaccacatgtgcgaactgcgttaaccatgtaaaaaattgtcgaatttttatgtctcaaa |
37539370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 30526070 - 30526006
Alignment:
| Q |
236 |
caaatttaaggttaatgaagttcagtagatggttaataagttgtgacacccgatatatctattaa |
300 |
Q |
| |
|
||||||| |||| |||||||| || | ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
30526070 |
caaatttgtggttgatgaagttatgttggtggttaataagttttgacacctgatatatctattaa |
30526006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 30566410 - 30566346
Alignment:
| Q |
236 |
caaatttaaggttaatgaagttcagtagatggttaataagttgtgacacccgatatatctattaa |
300 |
Q |
| |
|
||||||| |||| |||||||| || | ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
30566410 |
caaatttgtggttgatgaagttatgttggtggttaataagttttgacacctgatatatctattaa |
30566346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University