View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8403_high_18 (Length: 395)
Name: NF8403_high_18
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_18 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 35187074 - 35186770
Alignment:
| Q |
18 |
atttatggttacgtgcggtttatgtcgttagttacaaaccataaaacacttgaacatctt---gttttattgaaaagattagaagaattgtagaagagaa |
114 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35187074 |
atttatgtttacgtgcggtttaagtcgttagttacaaaccataaaacacttgaacatcttcttgttttattgaaaagattagaagaattgtagaagagaa |
35186975 |
T |
|
| Q |
115 |
tatagtaaggggtggacccagactggaaagtttagaggggccaaaacaaaaccaagtcaatatagttactaacctacatgctacaaccacgttgcactat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
35186974 |
tatagtaaggggtggacccagactggaaagttgagaggggccaaaacaaaaccaagtc---------actaacctacatgctacaaccacgttggactat |
35186884 |
T |
|
| Q |
215 |
ctcaattcagctttcattcggtgtatgttgctttc------atttttattaagagaaatggtaattgcaaacgctcaaacaatcgtcttttaacacacgc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35186883 |
ctcaattcagctttcattcggtgtatgttgctttcatttttatttttattaagagaaatggtaattgcaaacgctcaaacaatcgtcttttaacacacgc |
35186784 |
T |
|
| Q |
309 |
ctatctatctatct |
322 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
35186783 |
ctatctatccatct |
35186770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 6177128 - 6177192
Alignment:
| Q |
331 |
ccacttgatattaatccaattatagttggtagaatatttgcgggactatctgtccaactcagatc |
395 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
6177128 |
ccacttgatattaatccatttatagttggtagaatacttgctggactatctgtccaactcagatc |
6177192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 6214636 - 6214700
Alignment:
| Q |
331 |
ccacttgatattaatccaattatagttggtagaatatttgcgggactatctgtccaactcagatc |
395 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
6214636 |
ccacttgatattaatccatttatagttggcagaatacttgctggactatctgtccaactcagatc |
6214700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University