View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_20 (Length: 368)
Name: NF8403_high_20
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 48023000 - 48022654
Alignment:
| Q |
1 |
aggatctggttgagaaagagtggtttgtactttgtattcataagcggaagcagaagcaaaaatctcatcagtagttttattccaaacaatattacaatta |
100 |
Q |
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| T |
48023000 |
aggatctggttgagaaagagtggtttgtactttgtattcataagctgaagcagaagcaaaaatctcattagtagttttattccaaacaatattacaatta |
48022901 |
T |
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| Q |
101 |
tctttgttagtatgaggagatatgcatgtctacattttcaataatgtggttaggacgaagggtcattatcctatttagatctcaacccctcgtgtttaag |
200 |
Q |
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| T |
48022900 |
tctttgttagtatgaggagatatgcatgtctacattttcaataatgtggttaggaagaagggtcattatcctatttagatctcaacccctcgtgtttaag |
48022801 |
T |
|
| Q |
201 |
acaaagttattaagtaagtcacatattcgaccaaaggtatttcacctagagcacatttcttcaaccttccacaattttggagtcaatgatctctccagaa |
300 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48022800 |
ac--agttattaagtaagtcacatattcgaccaagggtatttcacctagagcacatttcttcaaccttccacaattttggagtcaatgatctctccagaa |
48022703 |
T |
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| Q |
301 |
ataaacaatagtttcttttcttactctcgatatcaatttggcatacaca |
349 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48022702 |
ataaacaatagttccttttcttactctcgatatcaatttggcatacaca |
48022654 |
T |
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