View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_23 (Length: 353)
Name: NF8403_high_23
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 11195386 - 11195719
Alignment:
| Q |
5 |
aatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgacattgtcaccataaacttgaaatttaacaatac |
104 |
Q |
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| T |
11195386 |
aatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgacattgtcaccttaaacttgaaattttacaatac |
11195485 |
T |
|
| Q |
105 |
aatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgttagatgttgcagctgcatacactatctggaaa |
204 |
Q |
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| T |
11195486 |
aatttgaatgaagttttaatctttttttacaaagtcaacaatgagctgagaggctagcccagtgatgttagttgttgcagctgcgtacactataatgaaa |
11195585 |
T |
|
| Q |
205 |
gtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatagtaccttcttgcagaccatgctcctcatcctttattt |
304 |
Q |
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| |||||||||||| |||||||| |||| |||||||||| | ||||||| |||| ||||||| ||||||| |||||| ||||| | |
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| T |
11195586 |
gaatattttagtaaagtttgtaaccaatgattctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatct |
11195685 |
T |
|
| Q |
305 |
tcttcaccataattgaatcaaatacacttgaaag |
338 |
Q |
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||||||| |||| || |||||||||||||||||| |
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| T |
11195686 |
tcttcactataactgcatcaaatacacttgaaag |
11195719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 11154946 - 11155272
Alignment:
| Q |
12 |
acatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttga |
111 |
Q |
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|||||||||||||| || ||||||| | |||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
11154946 |
acatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgacattgtcaccttaaacttgaaattttacaatacaatttga |
11155045 |
T |
|
| Q |
112 |
atgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatatt |
211 |
Q |
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| T |
11155046 |
atgaagttttaatctttttttacaaagtcaacaatgagttgagaggctagcccggtgatgttagttgttgcagctgcatggactataatgaaagaatatt |
11155145 |
T |
|
| Q |
212 |
ttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatagtaccttcttgcagaccatgctcctcatcctttattttcttcac |
311 |
Q |
| |
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||||||| || |||| |||| |||||||||| | ||||||| |||| ||||||| ||||||| |||||| ||||| |||||||| |
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| T |
11155146 |
ttagtaaagtttgtttccaatgattctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcac |
11155245 |
T |
|
| Q |
312 |
cataattgaatcaaatacacttgaaag |
338 |
Q |
| |
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|||| || |||||||||||||||||| |
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| T |
11155246 |
tataactgcatcaaatacacttgaaag |
11155272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 11246591 - 11246449
Alignment:
| Q |
83 |
taaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnn----caaaaagtcaacaattatagaagaagctagcccggtgatgttagatg |
178 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagttttaacttttttttcttcataaagtcaacaattatagaagaagctagcccgatgatgttagttg |
11246492 |
T |
|
| Q |
179 |
ttgcagctgcatacactatctggaaagtatattttagtaataa |
221 |
Q |
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| T |
11246491 |
ttgcagctgcaaacactatctggaaagtatattttagtgataa |
11246449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 338
Target Start/End: Original strand, 11208096 - 11208373
Alignment:
| Q |
57 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
156 |
Q |
| |
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|||| ||||||||||||||||| | |||| |||||||| ||| |||||||||||||||| |||||| | ||||||||||||| ||||||| |
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| T |
11208096 |
ttattatatagttgacattgtcgct-taaatatgaaatttcacagtacaatttgaatgaaggtttaacttttt---ataaagtcaacaattccagaagaa |
11208191 |
T |
|
| Q |
157 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcat |
256 |
Q |
| |
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||| ||||||||||| | ||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||| || |||| || |
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| T |
11208192 |
actatcccggtgatgtcacctgttgcagctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcttctttttcttcactggat |
11208291 |
T |
|
| Q |
257 |
aactaaccatagtaccttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaag |
338 |
Q |
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| T |
11208292 |
gcccaaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaag |
11208373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 11316048 - 11315989
Alignment:
| Q |
177 |
tgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
236 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
11316048 |
tgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgatt |
11315989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 11315976 - 11315911
Alignment:
| Q |
273 |
ttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaag |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |
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| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
11315911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 11273084 - 11273259
Alignment:
| Q |
57 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
156 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||| || |||||| ||||||||| |||||| | |||||||||||||| ||||||| |
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| T |
11273084 |
ttattatatagttgacattgtcact-taaatttgaaatttcaccgtacaatatgaatgaaggtttaacttttt---ataaagtcaacaattacagaagaa |
11273179 |
T |
|
| Q |
157 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
236 |
Q |
| |
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||| |||||||||| | ||||| | ||||||||||| ||||||| ||||||| |||||| | ||||||| |||| |
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|
| T |
11273180 |
actattccggtgatgtcacctgttgtaactgcatacactgactggaaacaatattttgctaataatgataaccaatgatt |
11273259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 11169286 - 11169551
Alignment:
| Q |
69 |
tgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtg |
168 |
Q |
| |
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|||||||||||| |||| ||||||||| || |||||||||||||||| |||||| | |||||||| |||| ||||||| ||| |||||| |
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| T |
11169286 |
tgacattgtcact-taaatttgaaatttcacggtacaatttgaatgaaggtttaacttttt---ataaagtcaatcattacagaagaaactattccggtg |
11169381 |
T |
|
| Q |
169 |
atgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatag |
268 |
Q |
| |
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|||| | ||||| ||||||||||||| ||| |||| |||||| |||||| |||||||||||||| ||| || | || | |||||||| |
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| T |
11169382 |
atgtcacctgttgtagctgcatacactgtctcgaaacaatatttggctaataatggtaaccaacgattcttttttttgttcacgggatgtccaaccatag |
11169481 |
T |
|
| Q |
269 |
taccttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaag |
338 |
Q |
| |
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|||||||||||| || ||| ||||||||||||| |||| | | ||||| |||||| ||||||||||| |
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| T |
11169482 |
taccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaag |
11169551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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