View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_32 (Length: 242)
Name: NF8403_high_32
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 28431343 - 28431444
Alignment:
| Q |
17 |
cactttattccaaaacacagaaacataatatagtcttgccccacgttctttgttggatggagtggaagaactcccatacattgcctaatacctgccatcc |
116 |
Q |
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| T |
28431343 |
cactttattccaaaacacagaaacataatatagtcttgccccacgttctttgttggatggagtggaagaactcccatacattgcctaatgcctgccatcc |
28431442 |
T |
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| Q |
117 |
at |
118 |
Q |
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|| |
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| T |
28431443 |
at |
28431444 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 28431821 - 28431875
Alignment:
| Q |
188 |
cataagttaagtagaattaattttgtattgatatgttcattttatatacaactat |
242 |
Q |
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| T |
28431821 |
cataagttaagaagaattaattttgtattgatatgttcattttatatacaactat |
28431875 |
T |
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