View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_high_33 (Length: 232)
Name: NF8403_high_33
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 2037619 - 2037440
Alignment:
| Q |
16 |
aagaaggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2037619 |
aagaaggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattaaaa |
2037520 |
T |
|
| Q |
116 |
cagtaaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaacaaaaaatagccaattagaagg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2037519 |
cagtaaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaacaaaaaatagccaattagaagg |
2037440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 2046868 - 2046694
Alignment:
| Q |
20 |
aggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagt |
119 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||| || ||||||| |||| |||||||||||||||| | |
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| T |
2046868 |
aggataataatggcaaagagcaaataacccttgagtacaatccatatcttttagatgatttggatgcaaacctaaatcttcagataacaattcaaacaat |
2046769 |
T |
|
| Q |
120 |
aaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaacaaaaaatagccaattagaag |
194 |
Q |
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|| ||||||||||| |||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||| |
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| T |
2046768 |
aaagtccctagattcatcatgtgttttccatattctagtattatatctctgcaagaataaatagccaattagaag |
2046694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 2029492 - 2029339
Alignment:
| Q |
20 |
aggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagt |
119 |
Q |
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||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
2029492 |
aggataataatggcaaagagcaattagcccttcggcacaacccatatcttttagatggtttggattcaaacctaaagcttgtgacaacaattcaaacagc |
2029393 |
T |
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| Q |
120 |
aaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaa |
173 |
Q |
| |
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|| || |||||||| ||| ||||| ||||||||||| ||||||||||||||| |
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| T |
2029392 |
aaagttcctagattcatcacctgtttcccatattctagtagtatatctctgcaa |
2029339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 2058020 - 2057843
Alignment:
| Q |
16 |
aagaaggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaa |
115 |
Q |
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|
|||||||||||||||| |||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
2058020 |
aagaaggataataatgacaaagagcaattagcccttcagcacaacccatatcttttagatggtttggattcaaacctaaagcttctgacaacaattcaaa |
2057921 |
T |
|
| Q |
116 |
cagtaaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaacaaaaaatagccaattagaa |
193 |
Q |
| |
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|||||| || |||||||| ||| ||||| ||||||| ||| | | |||||||||| || || |||| |||||||| |
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| T |
2057920 |
cagtaaagttcctagattcatcacttgtttcccatattatagtatcacatctctgcaagaacaagtagctaattagaa |
2057843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 10768516 - 10768363
Alignment:
| Q |
20 |
aggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagt |
119 |
Q |
| |
|
|||||||||||| | ||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||| | |
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| T |
10768516 |
aggataataatgaccgagagcaagtaatccttcagcacaatcaatatcttttagatggtttggattcagacctaaagcttctgagcatagttcaaacaat |
10768417 |
T |
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| Q |
120 |
aaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaa |
173 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||||||| | ||||||||||||| |
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|
| T |
10768416 |
aaagtccctaggtttctcatgtgttttccatattctagcaatatatctctgcaa |
10768363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 2050783 - 2050633
Alignment:
| Q |
20 |
aggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||| |
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| T |
2050783 |
aggataataatggcaaagagcaattagcccttcagcacaacccatatcttttagatggtttggattcagtcctaaagcttctgacatcaattcaaatagt |
2050684 |
T |
|
| Q |
120 |
aaggtccctagatttgtcatgtgttttccatattctagaagtatatctctg |
170 |
Q |
| |
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|| || |||||||| ||| ||||| ||||||||||| | || ||||||| |
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| T |
2050683 |
aaagttcctagattcatcacctgtttcccatattctagtattacatctctg |
2050633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 2055185 - 2055039
Alignment:
| Q |
27 |
taatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagtaaggtcc |
126 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| |
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| T |
2055185 |
taatggcaaagagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtcc |
2055086 |
T |
|
| Q |
127 |
ctagatttgtcatgtgttttccatattctagaagtatatctctgcaa |
173 |
Q |
| |
|
||||||| |||||||||| |||||| ||| ||||||||||||||| |
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| T |
2055085 |
ctagattcatcatgtgtttcccatatcgtagcagtatatctctgcaa |
2055039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 2034044 - 2033898
Alignment:
| Q |
27 |
taatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagtaaggtcc |
126 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| |
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| T |
2034044 |
taatggcaaagagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtcc |
2033945 |
T |
|
| Q |
127 |
ctagatttgtcatgtgttttccatattctagaagtatatctctgcaa |
173 |
Q |
| |
|
||||||| |||||| ||| ||||||| || ||||||||||||||| |
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|
| T |
2033944 |
ctagattcatcatgtatttcccatattgtaacagtatatctctgcaa |
2033898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 1948659 - 1948813
Alignment:
| Q |
16 |
aagaaggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||| || |||| |||||||||||||||||||||| |||| |||||| |||||||| || |||||||| |
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| T |
1948659 |
aagaaggataataatggcaaacagcaatcagcccttcagtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaa |
1948758 |
T |
|
| Q |
116 |
cagtaaggtccctagatttgtcatgtgttttccatattctagaagtatatctctg |
170 |
Q |
| |
|
|| | ||||||||||| ||| |||||| ||||||||||| |||||||||| |
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|
| T |
1948759 |
caacatagtccctagattcatcacgtgtttcccatattctagggttatatctctg |
1948813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 48906959 - 48907129
Alignment:
| Q |
20 |
aggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattcaaacagt |
119 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
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| T |
48906959 |
aggataataatggcaagcagcaattagcccttcaacacaacccatatcttttagatggtttggattcagacctaaagcttctgacagcaattcaaatagt |
48907058 |
T |
|
| Q |
120 |
aaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaacaaaaaatagccaatta |
190 |
Q |
| |
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|| || || || |||| ||||| | |||||||| ||||| ||||||||| || ||||||| ||||| |
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|
| T |
48907059 |
aaaaatcccaggttcatcatttgtttactatattctatcagtatgtctctgcaagaataaatagcaaatta |
48907129 |
T |
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