View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8403_high_34 (Length: 217)
Name: NF8403_high_34
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 29037762 - 29037569
Alignment:
| Q |
7 |
tacattttaaagcttcaacaaaatcgtgtataccaccttgttaaacttattaacattccaaaaatccacattaataagtagtaatttaatataggagact |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037762 |
tacattttaatgcttcaacaaaatcgtgtatagcaccttgttaaacttattaacattccaaaaatccacattaataagtagtaatttaatataggagact |
29037663 |
T |
|
| Q |
107 |
taccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagcttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037662 |
taccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagcttctg |
29037569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 29017803 - 29017711
Alignment:
| Q |
102 |
agacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacag |
194 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29017803 |
agacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaataggtggtagtgtcacag |
29017711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University