View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_high_35 (Length: 213)

Name: NF8403_high_35
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_high_35
NF8403_high_35
[»] chr1 (8 HSPs)
chr1 (13-116)||(9826104-9826207)
chr1 (117-200)||(9825983-9826067)
chr1 (13-116)||(9822533-9822636)
chr1 (117-200)||(9751021-9751105)
chr1 (117-200)||(9753934-9754016)
chr1 (13-113)||(9811706-9811803)
chr1 (61-116)||(9751141-9751196)
chr1 (64-116)||(9754048-9754100)
[»] scaffold0432 (2 HSPs)
scaffold0432 (48-116)||(1937-2005)
scaffold0432 (13-60)||(2036-2083)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 9826207 - 9826104
Alignment:
Q  13 tatcattcaacaaaacaacacattccaccaatgataccaaaatcagctccaatagttcatgattctaatttttattgatttgcagctggaattactaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9826207 tatcattcaacaaaacaacacattccaccaatgataccaaaatcagctccaatagttcatgattctaattgttattgatttgtagctggaattactaatt 9826108  T
Q  113 agct 116  Q
    ||||    
T  9826107 agct 9826104  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 9826067 - 9825983
Alignment:
Q  117 atatgacaacaattttgagaccatagacactcggaggga-tactatttattcaagtcaaggattaaataaatatttggtcattct 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9826067 atatgacaacaattttgagaccatagacactcggagggagtactatttattcaagtcaagaattaaataaatatttggtcattct 9825983  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 9822636 - 9822533
Alignment:
Q  13 tatcattcaacaaaacaacacattccaccaatgataccaaaatcagctccaatagttcatgattctaatttttattgatttgcagctggaattactaatt 112  Q
    |||||||||||||||||| |||||||| || ||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  9822636 tatcattcaacaaaacaaaacattccaacagtgacaccaaaatcagctccaatggttcatgattctaattattattgatttgtagctggaatttctaatt 9822537  T
Q  113 agct 116  Q
    ||||    
T  9822536 agct 9822533  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 9751105 - 9751021
Alignment:
Q  117 atatgacaacaattttgagaccatagacactcggaggga-tactatttattcaagtcaaggattaaataaatatttggtcattct 200  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  9751105 atatgacaccaattttgagacaatagacactcggagggagtactatttattcaagtcaaggattaaataaatatttggccattct 9751021  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 9754016 - 9753934
Alignment:
Q  117 atatgacaacaattttgagaccatagacactcggagggatactatttattcaagtcaaggattaaataaatatttggtcattct 200  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  9754016 atatgacaccaattttgagacaatagacactcggaggg-tactatttattgaagtcaaggattaaataaatatttggtcattct 9753934  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 9811803 - 9811706
Alignment:
Q  13 tatcattcaacaaaacaacacattccaccaatgataccaaaatcagctccaatagttcatgattctaatttttattgatttgcagctggaattactaatt 112  Q
    ||||||||||||||||||||||||||||   |||  | ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9811803 tatcattcaacaaaacaacacattccac---tgaccctaaaatcaactccaatggttcatgattctaattgttattgatttgcagctggaattactaatt 9811707  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 9751196 - 9751141
Alignment:
Q  61 ccaatagttcatgattctaatttttattgatttgcagctggaattactaattagct 116  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  9751196 ccaatagttcatgattctaattgttattgaattgtagctggaattactaattagct 9751141  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 9754100 - 9754048
Alignment:
Q  64 atagttcatgattctaatttttattgatttgcagctggaattactaattagct 116  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  9754100 atagttcatgattctaattgttattgaattgtagctggaattactaattagct 9754048  T

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Target: scaffold0432 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 2005 - 1937
Alignment:
Q  48 accaaaatcagctccaatagttcatgattctaatttttattgatttgcagctggaattactaattagct 116  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||  |||| |||| || ||||||||    
T  2005 accaaaatcagctccaatggttcatgattctaattgttattgatttatagctagaataacaaattagct 1937  T

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Target: scaffold0432; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 2083 - 2036
Alignment:
Q  13 tatcattcaacaaaacaacacattccaccaatgataccaaaatcagct 60  Q
    |||| |||||||||||||||||||||| || ||| |||||||||||||    
T  2083 tatccttcaacaaaacaacacattccaacactgacaccaaaatcagct 2036  T

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