View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_low_1 (Length: 1071)

Name: NF8403_low_1
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_low_1
NF8403_low_1
[»] chr6 (5 HSPs)
chr6 (17-567)||(18748370-18748923)
chr6 (795-1054)||(18749547-18749802)
chr6 (671-731)||(18749027-18749084)
chr6 (212-278)||(18727572-18727639)
chr6 (274-324)||(4804747-4804797)
[»] chr8 (2 HSPs)
chr8 (17-217)||(39533469-39533669)
chr8 (27-125)||(25938807-25938905)
[»] chr1 (2 HSPs)
chr1 (32-217)||(28214384-28214569)
chr1 (796-840)||(47695193-47695237)
[»] chr3 (3 HSPs)
chr3 (34-217)||(29704434-29704618)
chr3 (111-190)||(41470417-41470496)
chr3 (133-178)||(15789927-15789972)
[»] chr4 (1 HSPs)
chr4 (142-213)||(52467996-52468067)
[»] chr5 (3 HSPs)
chr5 (419-488)||(7493218-7493287)
chr5 (133-178)||(8724594-8724639)
chr5 (72-113)||(22786323-22786364)
[»] chr7 (1 HSPs)
chr7 (75-149)||(27804875-27804949)
[»] chr2 (1 HSPs)
chr2 (75-149)||(14150497-14150571)


Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Original strand, 18748370 - 18748923
Alignment:
Q  17 agagggacgatttatacgcgcaaaaacaatgtggtttttcccggtttgctctgtagatgttggtgaagctttgggactgttttatgctattcaatgggtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18748370 agagggacgatttatacgcgcaaaaacaatgtggtttttcccggtttgctcggtagatgttggggaagctttgggactgttttatgctattcaatgggtt 18748469  T
Q  117 catgaactaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaacagagatatcactgagtttggaaaca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18748470 catgaactaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaacagagataacactgagtttggaaaca 18748569  T
Q  217 tatttcttttaaaaccacaatcccacaagtcataaaaaaggggatagtagttaacttcattctattaagtatttttactttacatttcaaaaacaaactg 316  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18748570 tttttcttttaaaaccacaatcccacaagtcataaaaaaggggatagtagttaacttcattctattaagtatttttactttacatttcaaaaacaaactg 18748669  T
Q  317 atatgtgtatgtatgtgtttgtcataggttttcccacatcggactttggaatgaatagataaaatccctcataaatttaaattttgtaaaaaat-ccccg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||| ||||||||| |||||    
T  18748670 atatgtgtatgtatgtgtttgtcataggttttcccacatcggactttggaatgaatagacaaaatccctcctaaaattaactttcgtaaaaaatcccccg 18748769  T
Q  416 atatttaagaaacttc-aaaaaaccctcctaaaatagtcaaatattagtcaactatcctcatctgtttgttttgcgggtt-aacccttaatgtgacagtt 513  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||  ||||    
T  18748770 atatttaagaaacttcaaaaaaaccctcctaaaatagtcaaatattagtcaactaccctcatctgtttgttttgccggttaaacccttaatgtggtagtt 18748869  T
Q  514 aattgtactcgtagcacctccacgtggactgaccaggtcacaaggggtaaatga 567  Q
    || |||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  18748870 aactgtacatgtagcacctccacgtggactgaccaggtcacagggggtaaatga 18748923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 795 - 1054
Target Start/End: Original strand, 18749547 - 18749802
Alignment:
Q  795 cttgatggatttaagagttagagattttattgttttgatcaaataagaaacaatgaagggaaaggaattgtatgtatattcacatgattctaaagtcaaa 894  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18749547 cttgatggatttaagagttagagattttattgttttgatcaaataagaaacaatgaagggaaaggaattgtatgtatattcacatgattctaaagtcaaa 18749646  T
Q  895 accaaaatcataagatatggatcatggataaggtgcaaatcaattctactgcaacagaataaaacattacaacatcgagaaacctatacttcacttgaag 994  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||    |  ||||||||    
T  18749647 accaaaatcataagatatggatcatggataaggtgcaaatcaattctactgcaacagaataaaacattaaaacattgagaaaact----tatacttgaag 18749742  T
Q  995 ttttctaatcttaaacaaagacaatagaatcaaaggaggtgatttgagttacccatttgc 1054  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18749743 ttttctaatcttaaacaaagacaatagaatcaaacgaggtgatttgagttacccatttgc 18749802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 671 - 731
Target Start/End: Original strand, 18749027 - 18749084
Alignment:
Q  671 aagaaacaacaatcatcaacaacaacatcgtcatcatctcattattacacctctaccacca 731  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  18749027 aagaaacaacaatcatcaacaacaacatc---atcatctcattattacacctctaccacca 18749084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 18727572 - 18727639
Alignment:
Q  212 aaacatatttcttttaaaaccacaatcccacaagtcata-aaaaaggggatagtagttaacttcattc 278  Q
    |||||||||||||||||||||||| ||| |||||||| | |||| |||||||||||||||||||||||    
T  18727572 aaacatatttcttttaaaaccacattccaacaagtcacagaaaagggggatagtagttaacttcattc 18727639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 4804747 - 4804797
Alignment:
Q  274 cattctattaagtatttttactttacatttcaaaaacaaactgatatgtgt 324  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4804747 cattctatgaagtatttttactttacatttcaaaaacaaactgatgtgtgt 4804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 39533469 - 39533669
Alignment:
Q  17 agagggacgatttatacgcgcaaaaacaatgtggtttttcccggtttgctctgtagatgttggtgaagctttgggactgttttatgctattcaatgggtt 116  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  39533469 agaggggcgattcatacgcgcaaaaacaatgtggttttccccggtttgctcagtagatgttggtgaagctttgggactgttttatgctattcgatgggtt 39533568  T
Q  117 catgaactaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaacagagatatcactgagtttggaaaca 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  39533569 catgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcaaattattttaaccgaagcaatagagctatcactgagtttggaaaca 39533668  T
Q  217 t 217  Q
    |    
T  39533669 t 39533669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 25938807 - 25938905
Alignment:
Q  27 tttatacgcgcaaaaacaatgtggtttttcccggtttgctctgtagatgttggtgaagctttgggactgttttatgctattcaatgggttcatgaacta 125  Q
    |||||||| |||||||| |||||||     |||||||||||  |||||||||| |||||| ||||||| |   ||||||| |||||||| |||||||||    
T  25938807 tttatacgagcaaaaacgatgtggtcgaatccggtttgctcaatagatgttggagaagctatgggactctcacatgctatccaatgggtacatgaacta 25938905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 28214569 - 28214384
Alignment:
Q  32 acgcgcaaaaacaatgtggtttttcccggtttgctctgtagatgttggtgaagctttgggactgttttatgctattcaatgggttcatgaactaagactt 131  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  28214569 acgcgcaaaaacaatgtggttttccccggtttgctcggtagatgttgatgaagttttgggactgttttatgctattcgatgggttcatgagctaagactt 28214470  T
Q  132 caaaatgttgattttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaacagagatatcactgagtttggaaacat 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28214469 caaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaagcaacagagatatcactgagtttgaaaacat 28214384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 796 - 840
Target Start/End: Original strand, 47695193 - 47695237
Alignment:
Q  796 ttgatggatttaagagttagagattttattgttttgatcaaataa 840  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47695193 ttgatggatttaagagttagagattttattgttttgatcaaataa 47695237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 8e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 29704434 - 29704618
Alignment:
Q  34 gcgcaaaaacaatgtggtttttcccggtttgctctgtagatgttggtgaagctttgggactgttttatgctattcaatgggttcatgaactaagacttca 133  Q
    |||||||||||||||||||||  | | |||| ||  |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  29704434 gcgcaaaaacaatgtggttttctcagatttgttcgatagatgttggtgaagctttgcgactgttttatgctattcgatgggttcatgagctaagacttca 29704533  T
Q  134 aaatgttgattttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaacagagatatcac-tgagtttggaaacat 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  29704534 aaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaatcaatagagatatcacttgagtttggaaacat 29704618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 41470417 - 41470496
Alignment:
Q  111 tgggttcatgaactaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaa 190  Q
    ||||||||||| |||  ||| ||||||||  |||||||||||||||||||  ||||||| || |||||||||||| ||||    
T  41470417 tgggttcatgagctacaactccaaaatgtgaattttgaggttgattcgaagcgtgtagcggactattttaaccgaggcaa 41470496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 15789927 - 15789972
Alignment:
Q  133 aaaatgttgattttgaggttgattcgaaatgtgtagcagattattt 178  Q
    |||||||||||||||| ||||| |||||| | ||||||||||||||    
T  15789927 aaaatgttgattttgaagttgactcgaaacgagtagcagattattt 15789972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 52468067 - 52467996
Alignment:
Q  142 attttgaggttgattcgaaatgtgtagcagattattttaaccgaagcaacagagatatcactgagtttggaa 213  Q
    |||||||||| ||||||||  |||||||||||||||| |||||||||||   |||||| | |||||||||||    
T  52468067 attttgaggtagattcgaagcgtgtagcagattatttcaaccgaagcaatgaagatattattgagtttggaa 52467996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 7493287 - 7493218
Alignment:
Q  419 tttaagaaacttcaaaaaaccctcctaaaatagtcaaatattagtcaactatcctcatctgtttgttttg 488  Q
    ||||||||| |||||||| | | | |||||| |||||||||||||||| |||| || |||||||||||||    
T  7493287 tttaagaaatttcaaaaacctcccataaaattgtcaaatattagtcaattatcttcctctgtttgttttg 7493218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 8724594 - 8724639
Alignment:
Q  133 aaaatgttgattttgaggttgattcgaaatgtgtagcagattattt 178  Q
    |||||||||||||||| ||||| |||||| | ||||||||||||||    
T  8724594 aaaatgttgattttgaagttgactcgaaacgagtagcagattattt 8724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 22786364 - 22786323
Alignment:
Q  72 gatgttggtgaagctttgggactgttttatgctattcaatgg 113  Q
    |||||||| ||||| |||||||||||| ||||||||||||||    
T  22786364 gatgttggagaagcgttgggactgtttcatgctattcaatgg 22786323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 27804949 - 27804875
Alignment:
Q  75 gttggtgaagctttgggactgttttatgctattcaatgggttcatgaactaagacttcaaaatgttgattttgag 149  Q
    ||||| ||||| |||||| | |||||||||||||||||||| || ||||||  ||||  |||||| |||||||||    
T  27804949 gttggggaagcgttgggattattttatgctattcaatgggtacaagaactacaacttacaaatgtagattttgag 27804875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 14150571 - 14150497
Alignment:
Q  75 gttggtgaagctttgggactgttttatgctattcaatgggttcatgaactaagacttcaaaatgttgattttgag 149  Q
    ||||| ||||| |||||| | |||||||||||||||||||| || ||||||  ||||  |||||| |||||||||    
T  14150571 gttggagaagcgttgggattattttatgctattcaatgggtacaggaactacaacttacaaatgtagattttgag 14150497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University