View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8403_low_12 (Length: 453)
Name: NF8403_low_12
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 28288153 - 28288587
Alignment:
| Q |
1 |
acatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcacttgggtggcttccaacattagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288153 |
acatgaaaattctcaaatcttctcaaatagaactgtcccacatgcaatacatgcacttgatcataacaaattctcacttgggtggcttccaacattagct |
28288252 |
T |
|
| Q |
101 |
ttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288253 |
ttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattat |
28288352 |
T |
|
| Q |
201 |
tggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288353 |
tggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctc |
28288452 |
T |
|
| Q |
301 |
tatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaacattttgagaggtttatcggaactttctgggaagtctaatattgctgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28288453 |
tatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaacattttgagaggtttatcggaactttctgggacgtctaatattgctgat |
28288552 |
T |
|
| Q |
401 |
ttctttccaattcttcgtcctttagacccacaacg |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
28288553 |
ttctttccaattcttcgtcctttagacccacaacg |
28288587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 28297060 - 28296706
Alignment:
| Q |
1 |
acatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcacttgggtggcttccaacattagct |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||| | |||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
28297060 |
acatgaaaattcccaaatcttctctaatagaactgttccacatgcacttagtgcagttgatcatgacaaattctcaattgggtggcttccaacattagct |
28296961 |
T |
|
| Q |
101 |
ttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattat |
200 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
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|
| T |
28296960 |
ttatggaagaaactaaggaaaagttgtgccacaaatgtattttctaaaaaaatgcttgactcaacaaaaaaccttcgccaacaaaagttgcaagaattat |
28296861 |
T |
|
| Q |
201 |
tggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctc |
300 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| |
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|
| T |
28296860 |
tggattatgtgaatgaaaaaagcaacaaaggtgaggtttttgatattggtgaggctgtttttaacactgttcttaattcaatttcaaacactttgttctc |
28296761 |
T |
|
| Q |
301 |
tatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaacatt |
355 |
Q |
| |
|
||| ||||||||| |||| | ||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
28296760 |
tattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacatt |
28296706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 28321122 - 28320687
Alignment:
| Q |
1 |
acatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcacttgggtggcttccaacattagct |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| | |||| |||||||| ||||||||||| |||||||| ||||||||||| | |
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|
| T |
28321122 |
acatgacaattctcaaatcttttcaaatagaactgtcccacatgcaatctctgcagttgatcatgacaaattctcagttgggtgggttccaacattaaat |
28321023 |
T |
|
| Q |
101 |
ttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattat |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||| |
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|
| T |
28321022 |
ttgtggaagaaactaaggaaaagttgtgctacaaaagtattttctacaaaaatgcttgactcaacaagaaaccttcgccaacaaaagttgcaagaattat |
28320923 |
T |
|
| Q |
201 |
tggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctc |
300 |
Q |
| |
|
| |||||||| || |||||| | ||||||||||| | ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| |
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|
| T |
28320922 |
tagattatgtgaatgaaaaaagtaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcaatttcaaacactttgttctc |
28320823 |
T |
|
| Q |
301 |
tatggatttggctcattcaac---acctgatgaaaaatctcaagtgtttgagaacattttgagaggtttatcggaactttctgggaagtctaatattgct |
397 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| || ||||||| ||| ||| |||| | | ||| | |||| |||| ||| |||||||| | |
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|
| T |
28320822 |
tatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccattatttggggtatcatggaagaagctggtaagcctaatatttca |
28320723 |
T |
|
| Q |
398 |
gatttctttccaattcttcgtcctttagacccacaa |
433 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
28320722 |
gatttctttccaattcttcgtcccttagatccacaa |
28320687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 28310548 - 28310116
Alignment:
| Q |
1 |
acatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcacttgggtggcttccaacattagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
28310548 |
acatgaaaattctcaaatcttctctaatagaactgtcccacatgcactttgtgcacttgatcatgacaaattatcaattgggatgcttccaacattagct |
28310449 |
T |
|
| Q |
101 |
ttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattat |
200 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||| |||| ||||| |
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|
| T |
28310448 |
tcatggaagaaactaaggaaattttgtgctacaaaagtattttctacaaaagtacttgactcaacaaaaatccttcgccaacaaaagttgcaagaattat |
28310349 |
T |
|
| Q |
201 |
tggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctc |
300 |
Q |
| |
|
| |||||||| || |||||| | || |||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| | || |
|
|
| T |
28310348 |
tagattatgtgaatgaaaaaagtaagaaaggtgagatttttgatattggtgcggctgtttttacaactatccttaattcaatttcaaacactttgtgttc |
28310249 |
T |
|
| Q |
301 |
tatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaacattttgagaggtttatcggaactttctgggaagtctaatattgctgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || || | ||| | |||| |||| ||| ||||| || | ||| |
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|
| T |
28310248 |
tatggatttggctcattcaacacctgatgaaaagtctcaagaatttaagaacgttatgtggggtatcatggaagaagctggtaagcctaatgtttcagat |
28310149 |
T |
|
| Q |
401 |
ttctttccaattcttcgtcctttagacccacaa |
433 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |
|
|
| T |
28310148 |
ttctttccaattcttcgtccttttgatccacaa |
28310116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 52 - 433
Target Start/End: Complemental strand, 28331550 - 28331169
Alignment:
| Q |
52 |
tgcacttgatcataacaaattctcacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaa |
151 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28331550 |
tgcacttgatcatcacaaattctcaataggaacacttccaacattagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaa |
28331451 |
T |
|
| Q |
152 |
atgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattattggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtg |
251 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||| |||| |||||| |||||||| || |||||| |||||||||| || | |||||||||||||| |
|
|
| T |
28331450 |
atgcttgactcaacaaaaatccttcgtcaacaaaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtg |
28331351 |
T |
|
| Q |
252 |
aggctgtttttacaactgtccttaattcagtttcaaacactttcttctctatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaa |
351 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||||||| |||| |||| |
|
|
| T |
28331350 |
aggctgtttttaacactgttcttaattcaatttcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctcaagagtttaagaa |
28331251 |
T |
|
| Q |
352 |
catt-ttgagaggtttatcggaactttctgggaagtctaatattgctgatttctttccaattcttcgtcctttagacccacaa |
433 |
Q |
| |
|
||| ||| ||| || || |||| |||| ||| ||||| || | ||||||||||||||||||||||| || || |||||| |
|
|
| T |
28331250 |
aattattgggagtttcat-ggaagaagctggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaa |
28331169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 28304765 - 28304615
Alignment:
| Q |
182 |
caaaagttacaagtatta-ttggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattca |
280 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| || |||||| || |||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
28304765 |
caaaagttaaaagaattaattggattatgtgaaagaaaaaggctacaaaggtgaagtttttgatattggtgatgctgtttttacaactttctttaattca |
28304666 |
T |
|
| Q |
281 |
gtttcaaacactttcttctctatggatttggctcattcaacacctgatgaa |
331 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
28304665 |
atttcaaacactttgttctctattgatttggctcatttaacacatgatgaa |
28304615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 28296674 - 28296628
Alignment:
| Q |
387 |
ctaatattgctgatttctttccaattcttcgtcctttagacccacaa |
433 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| || |||||| |
|
|
| T |
28296674 |
ctaatatttcagatttctttccaattcttcgtccttttgatccacaa |
28296628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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