View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_16 (Length: 425)
Name: NF8403_low_16
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 416
Target Start/End: Complemental strand, 1429242 - 1428848
Alignment:
| Q |
21 |
cctatttggaccctccactgttgcctaagtttgaagcttggtgaaacttttcaatcatttgtaatgagttgaagcaatcaatcactgctaacaaaatgag |
120 |
Q |
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| T |
1429242 |
cctatttggaccctccactgttgcctaagtttgaagcttggtgaaacttttcaatcatttgtaatgagttgaagcaatcaatcactgctaacaaaatgag |
1429143 |
T |
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| Q |
121 |
aaaattgaaccaaacatttcctctgctactctttttcttcctacttgtgtaaacccttcagccatgaaagaataacttctgcacctttctcccatgaagt |
220 |
Q |
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| T |
1429142 |
aaaattgaaccaaacatttcctctgctactctttttcttcctacttgtgtaaacccttcagccatgaaagaataacttctgcacctttctcccatgaagt |
1429043 |
T |
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| Q |
221 |
gtccaacatcatgtcatgagcaagtccttcaacagatactggcgacacaccataaaactgtgcggtttctctgagtccctctgcatcctataaatcaaca |
320 |
Q |
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| T |
1429042 |
gtccaacatcatgtcatgagcaagtccttcaacagatactggcgacacaccataaaactgtgcggtttctctgagtccctctgcatcctataaatcaaca |
1428943 |
T |
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| Q |
321 |
aacgcagaaaactaacttaggttaggaacaaaaactacagaaacaaaatcaacgtcgcagaaatattgacagcgaagataactaggtaagaataat |
416 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1428942 |
aacgcagaaaactaccttaggtta-gagcaaaaactacagaaacaaaatcaacgtcgcagaaatattgacagcgaagataactaggtaagaataat |
1428848 |
T |
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