View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_17 (Length: 417)
Name: NF8403_low_17
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 26199548 - 26199919
Alignment:
| Q |
30 |
gctgaagttggcagctaggttctaaattggaccattttggctgaatggaaacgtgtttattaggaaataagttacttaaaatgatttatggggacatcaa |
129 |
Q |
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| T |
26199548 |
gctgaagttggcagctaggttctaaattggaccattttggctgaatggaaacgtgtttattaggaaataagttacttaaaatgatttatggggacatcaa |
26199647 |
T |
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| Q |
130 |
ttcatggcacaaagttagttctcaggtagagtgaccctttgaaagatctaagaatttcggcaactcccagataaggccagctataaaattaagataatga |
229 |
Q |
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| T |
26199648 |
ttcatggcacagagttggttctcaggtagagtgaccctttgaaagatctaagaatttcggcaactcccagataaggccagctataaaattaagataatga |
26199747 |
T |
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| Q |
230 |
attatcctatctcattttaccctatttgaagggaagataaaaggtggcaaccaatggaattgagtgacatggatgtcacccccctttccaatacattcta |
329 |
Q |
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| T |
26199748 |
attatcctatctcattttacccaatttgaagggaagataaaagatggcaaccaatggaattgagtgacatggatgtcacccctctttccaatacattcta |
26199847 |
T |
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| Q |
330 |
tcgattttttaaatatctaaattatatactatcatatcattctattccacttcatttcgctctattatattg |
401 |
Q |
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| T |
26199848 |
tcgattttttaaatatctaaattatatactatcatatcattctattccagttcatttcgctctattatattg |
26199919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26199499 - 26199529
Alignment:
| Q |
1 |
tggttgtgtttctaataatgaccataaaagc |
31 |
Q |
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| T |
26199499 |
tggttgtgtttctaataatgaccataaaagc |
26199529 |
T |
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