View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_low_2 (Length: 742)

Name: NF8403_low_2
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_low_2
NF8403_low_2
[»] chr4 (10 HSPs)
chr4 (19-734)||(54422667-54423381)
chr4 (295-600)||(29016551-29016856)
chr4 (633-726)||(43732638-43732731)
chr4 (370-569)||(23601502-23601701)
chr4 (214-461)||(32497849-32498096)
chr4 (337-476)||(1503707-1503846)
chr4 (659-729)||(32498294-32498364)
chr4 (497-558)||(43732502-43732563)
chr4 (439-477)||(1361986-1362024)
chr4 (646-720)||(29016900-29016974)
[»] chr1 (15 HSPs)
chr1 (22-731)||(20127738-20128455)
chr1 (262-728)||(12460046-12460512)
chr1 (310-725)||(27644623-27645038)
chr1 (342-729)||(51493030-51493417)
chr1 (613-734)||(14647323-14647444)
chr1 (538-710)||(30839616-30839788)
chr1 (250-404)||(44138115-44138269)
chr1 (421-710)||(4049745-4050034)
chr1 (337-464)||(50181263-50181390)
chr1 (659-722)||(13189595-13189658)
chr1 (19-54)||(15162882-15162917)
chr1 (633-720)||(44138453-44138540)
chr1 (634-729)||(50181560-50181655)
chr1 (382-464)||(27465299-27465381)
chr1 (514-600)||(44138334-44138420)
[»] chr6 (3 HSPs)
chr6 (373-728)||(16861703-16862058)
chr6 (310-731)||(21731088-21731507)
chr6 (355-720)||(21950903-21951268)
[»] scaffold0703 (1 HSPs)
scaffold0703 (262-728)||(938-1404)
[»] chr5 (9 HSPs)
chr5 (343-729)||(42578026-42578412)
chr5 (523-732)||(14277249-14277458)
chr5 (355-710)||(29291350-29291705)
chr5 (514-722)||(13022190-13022398)
chr5 (514-722)||(13093714-13093922)
chr5 (214-461)||(23149572-23149819)
chr5 (659-729)||(23150017-23150087)
chr5 (313-404)||(7273424-7273515)
chr5 (680-722)||(33496357-33496399)
[»] chr3 (7 HSPs)
chr3 (370-729)||(52966117-52966476)
chr3 (310-734)||(51141397-51141821)
chr3 (639-729)||(24596144-24596234)
chr3 (581-697)||(25898096-25898212)
chr3 (343-475)||(6864147-6864279)
chr3 (620-722)||(2332349-2332450)
chr3 (688-729)||(2500477-2500518)
[»] chr2 (8 HSPs)
chr2 (346-729)||(646968-647349)
chr2 (355-720)||(8072311-8072675)
chr2 (355-710)||(4018402-4018757)
chr2 (494-600)||(19932460-19932566)
chr2 (355-707)||(24465738-24466090)
chr2 (421-726)||(42703993-42704298)
chr2 (680-734)||(4243149-4243203)
chr2 (220-323)||(42704386-42704489)
[»] scaffold0010 (1 HSPs)
scaffold0010 (337-731)||(237951-238345)
[»] chr7 (12 HSPs)
chr7 (295-729)||(46598183-46598617)
chr7 (310-729)||(31800882-31801300)
chr7 (525-721)||(18222759-18222955)
chr7 (508-722)||(43968645-43968859)
chr7 (421-729)||(512360-512670)
chr7 (214-461)||(12352267-12352514)
chr7 (214-461)||(41146057-41146304)
chr7 (552-693)||(3885290-3885431)
chr7 (581-710)||(31402484-31402612)
chr7 (550-690)||(3899207-3899347)
chr7 (659-729)||(12351999-12352069)
chr7 (659-729)||(41146502-41146572)
[»] chr8 (7 HSPs)
chr8 (355-710)||(35612049-35612404)
chr8 (211-446)||(11625761-11625997)
chr8 (211-410)||(9182312-9182512)
chr8 (633-721)||(29929673-29929761)
chr8 (615-694)||(27846175-27846254)
chr8 (385-464)||(42199359-42199438)
chr8 (553-647)||(17640558-17640652)


Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 734
Target Start/End: Complemental strand, 54423381 - 54422667
Alignment:
Q  19 acttattatttgcagatgacagtttttt-attttgtaaagcaacaatggctgaagcgcaacatctcaaggaagctctctcattatgagcatgcatccggg 117  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  54423381 acttattatttacagatgacagtttttttattttgtaaagcaacaatggctgaagtgcaacatctcaaggaaactctctcattatgagcatgcatccggg 54423282  T
Q  118 caagcaataaattatggtgaatcggctattgcattcagctctaat------catgacaccgtggctgatatcacatctctccttggtgtatttgcggaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  54423281 caagcaataaattatggtgaatcggctattgcattcagctctaatactcaccatgaaaccgtggctgatatcacatctctccttggtgtacttgcggaaa 54423182  T
Q  212 ttggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  54423181 ttggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaagaccgcatctggaaaaactgtcagtc 54423082  T
Q  312 ttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattcca 411  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54423081 ttggagtgctcgctccctatcacgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccg 54422982  T
Q  412 acttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaac 511  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  54422981 acttctttatgtgaagaaatggacaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaac--------gtggggaaaac 54422890  T
Q  512 tcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactc 611  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54422889 tcactttacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgcttggtaaacaaggttggaaactcatgcacgactc 54422790  T
Q  612 aaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagt 711  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  54422789 aaactccttactcgctcatactctcaaagccaaatacttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagt 54422690  T
Q  712 ctatggagtacccaatctctgct 734  Q
    ||||||||| |||||||||||||    
T  54422689 ctatggagtgcccaatctctgct 54422667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 600
Target Start/End: Original strand, 29016551 - 29016856
Alignment:
Q  295 tggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgg 394  Q
    ||||| || ||| ||||||||||  |||  ||||| || |||||||| ||||| ||| | || ||||| || || |||||||| || || ||||||||||    
T  29016551 tggaagaagtgttggtcttggagctctcagtccctttctcgtgcaggtaaagaggttcttattaaatcggttgcgcaagctattccttcatattgtatgg 29016650  T
Q  395 gtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgg 494  Q
    ||||||| || || ||| | ||||||||||| || || ||| | |||||||| ||||||||  |||| || || ||| ||||  |  | || ||||||      
T  29016651 gtgcttttcttatcccatcctctttatgtgatgagatagaatgaatgatgaactcattttatcgggggtctaaaaaagatgggcgtagagggattaactc 29016750  T
Q  495 gatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttgg 594  Q
    |||| ||||||  ||||| |   |||||||||||   || || ||||| ||||||||||| ||||| |||||| |||| |||||  ||||||||||||||    
T  29016751 gatgaggtgggataaacttagcttacataaaagttcagggggacttggttttcgtaacatagaagccttcaatttttctatgctcggtaaacaaggttgg 29016850  T
Q  595 aaactc 600  Q
    ||||||    
T  29016851 aaactc 29016856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 633 - 726
Target Start/End: Original strand, 43732638 - 43732731
Alignment:
Q  633 tctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaa 726  Q
    |||||||||||||||||||||  | | ||||||| |||| || | ||||||||| |||||||||||||||||||| ||||| |||||| |||||    
T  43732638 tctcaaagccaaatacttcccacgacaggatttcgtggaggcccctcttggtcataatccaagctacacttggagaagtctttggagtgcccaa 43732731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 370 - 569
Target Start/End: Complemental strand, 23601701 - 23601502
Alignment:
Q  370 caagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaaga 469  Q
    |||||||| || ||||||||||||||||| || |||||||| ||||||||||| || || || ||    ||||||||||| ||||| ||| ||||  | |    
T  23601701 caagctatcccttcttattgtatgggtgcctttctcattcctacttctttatgcgatgagatcgagccaatgatgaattcgttttattggagttctgaaa 23601602  T
Q  470 aaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatct 569  Q
    | |||||| | || || |||||  ||||||| ||||  || |||||| |||| |||||| | || |||||||||||||||||  |||| || ||||||||    
T  23601601 agaatggttgtcgtggaattaattggatgtgttgggataagctcactttacacaaaagtttagggggccttggctttcgtaatttggaggctttcaatct 23601502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 461
Target Start/End: Original strand, 32497849 - 32498096
Alignment:
Q  214 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 313  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  32497849 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 32497948  T
Q  314 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 413  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  32497949 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 32498048  T
Q  414 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  32498049 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 32498096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 337 - 476
Target Start/End: Complemental strand, 1503846 - 1503707
Alignment:
Q  337 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 436  Q
    ||||| ||||| ||||| |||||||| || || |||| ||| || |||||||| ||| ||| ||| ||  |||| || |||||  | |||||||| ||||    
T  1503846 gcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaa 1503747  T
Q  437 ggatgatgaattcattttactggggttcaaagaaaaatgg 476  Q
    ||||| |||| || |||||||  |||||||||||||||||    
T  1503746 ggatgctgaactctttttactcaggttcaaagaaaaatgg 1503707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 729
Target Start/End: Original strand, 32498294 - 32498364
Alignment:
Q  659 gggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||||||| ||||| ||  |||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  32498294 gggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatct 32498364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 43732502 - 43732563
Alignment:
Q  497 tgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaa 558  Q
    |||||||||  ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  43732502 tgtggtgggataaactgactctacacaaaagtcttggaggcctaggctttcgtaatatggaa 43732563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 1361986 - 1362024
Alignment:
Q  439 atgatgaattcattttactggggttcaaagaaaaatggt 477  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  1361986 atgatgaattcattttattggggttcaaagaagaatggt 1362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 720
Target Start/End: Original strand, 29016900 - 29016974
Alignment:
Q  646 tacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagt 720  Q
    |||||||| ||  |||||||||||||  | | | ||||||||||||||||||| |||||||||||  ||||||||    
T  29016900 tacttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagt 29016974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 22 - 731
Target Start/End: Original strand, 20127738 - 20128455
Alignment:
Q  22 tattatttgcagatgacagttttttattttgtaaagcaacaatggctgaagcgcaacatctcaaggaagctctctc--attatgagcatgcatccgggca 119  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||  ||||||  | ||||||||||||||||| ||    
T  20127738 tattatttgcagatgacagttttttattctgcaaagcaacaatggctgaaacgcaacatctcaaggaaattctctcgcactatgagcatgcatccggcca 20127837  T
Q  120 agcaataaattatggtgaatcggctattgcattcagctctaat------catgacaccgtggctgatatcacatctctccttggtgtatttgcggaaatt 213  Q
    ||||||||| |||||| |||||||||| || ||||||||||||      ||||| || |||||||  |||||| |  |||| |||||||||||||| |||    
T  20127838 agcaataaactatggtaaatcggctatagctttcagctctaatacccatcatgatactgtggctgccatcacaaccttcctcggtgtatttgcggatatt 20127937  T
Q  214 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 313  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||  | |  || |||||||| ||||  ||||    
T  20127938 ggaagtggtaaataccttggcctcccatcaatgataggtcgaagtaaaaaggcagtattctcttacctaaaggatcaaatttggaaaaaatgtcaatctt 20128037  T
Q  314 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 413  Q
    |||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |    
T  20128038 ggagtgctcgatctctatcccgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttactgtatgggtgctttcctctttcctgc 20128137  T
Q  414 ttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactc 513  Q
    ||| |||||||| ||||||||||| | |||||| || |||||||||||||| ||||||||||| || || ||||||||| ||||| | |||| |||||||    
T  20128138 ttcattatgtgaggaaatggaaagaaggatgaactctttttactggggttctaagaaaaatggcaggcgtggtattaactggatgcgatgggaaaaactc 20128237  T
Q  514 actctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaa 613  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||    
T  20128238 actctacataaaagtcttggtggccttggctttcgcaacatggaagcattcaatctttcaatgcttggtaagcaaggttggaaactcatgaccgactcaa 20128337  T
Q  614 actccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtct 713  Q
    ||||||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  20128338 actccttactcactcgtactctcaaagccaaatactttcccatacgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtct 20128437  T
Q  714 atggagtacccaatctct 731  Q
    ||||||||||||||||||    
T  20128438 atggagtacccaatctct 20128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 262 - 728
Target Start/End: Complemental strand, 12460512 - 12460046
Alignment:
Q  262 aaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaat 361  Q
    |||||||| ||||||||||| ||  ||||||| ||||| || ||||  || |||| |||||| || ||||| || || || || ||| |||| || ||||    
T  12460512 aaggcaattttctcttacttgaaggaccgcatatggaagaagtgtcaatcctggaatgctcgttctctatctcgagctggtaaggaaattttaattaaat 12460413  T
Q  362 ccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
    | || || || ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||    
T  12460412 cagtcgctcaggctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactgggg 12460313  T
Q  462 ttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagca 561  Q
    ||| || || |||||  | || ||||| ||  ||||| | ||||  ||||||||| | || |||||||||||||||||||| ||||| ||  ||||||||    
T  12460312 ttcgaaaaagaatggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggccttggttttcgcaatttggaagca 12460213  T
Q  562 ttcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcggg 661  Q
    ||||||||||| |||||  |||| ||| ||||||||||||||   |||||||| |||||||| ||||||   |||||||||||||| |||||  | ||||    
T  12460212 ttcaatctttctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacggg 12460113  T
Q  662 atttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatc 728  Q
    ||||||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||||||||    
T  12460112 atttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatc 12460046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 310 - 725
Target Start/End: Complemental strand, 27645038 - 27644623
Alignment:
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
    |||||||||||||| || || || ||||| || || ||| |||||||||||||    || || ||||| |||||||||||||||||||| |||||  | |    
T  27645038 tcttggagtgctcggtcactttcccgtgctggtaaggaaattttgatcaaatctactgctcaggctattccctcttattgtatgggtgccttccttctcc 27644939  T
Q  410 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaa 509  Q
    | |||||  | ||||  ||||| || || || |||||||||||||| |||||||| || || |||||| | || ||||| ||  ||||| | ||||  ||    
T  27644938 ctacttcactttgtgcggaaattgagagaataatgaattcattttattggggttctaaaaagaatggtcgtcgtggtataaattggatgcgatgggagaa 27644839  T
Q  510 actcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgac 609  Q
    |||||||   |||||||  || || |||||  | ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||  ||||    
T  27644838 actcacttatcataaaaccctcggcggcctcagttttcgtaacatggaagctttcaatctttcaatgcttggtaaacaaagttggaaactcttgaccgac 27644739  T
Q  610 tcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggagga 709  Q
    || | ||||||||| |||||||  |||||||||||||| |||||| |  ||||||||||||| ||   ||||||||| ||||||||||| ||||||||||    
T  27644738 tctacctccttacttactcgtatcctcaaagccaaatatttcccgcgtagggatttcttggatgcctctcttggtcataatccaagctatacttggagga 27644639  T
Q  710 gtctatggagtaccca 725  Q
    |||| |||||||||||    
T  27644638 gtctttggagtaccca 27644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 342 - 729
Target Start/End: Complemental strand, 51493417 - 51493030
Alignment:
Q  342 aaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatg 441  Q
    |||||||||| |||| ||||| || ||  ||||||| || ||||| || ||| | || ||| ||||||| | ||| |||||||| ||| | ||||| ||     
T  51493417 aaaagaagttctgattaaatcggttgcttaagctatcccttcttactgcatgagggcattcatcattcctagttcattatgtgaggaactagaaagaatc 51493318  T
Q  442 atgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttg 541  Q
    |||||||||||||| ||||| || || || || ||| | ||||| || ||  |||||   ||||  || |||||||| |||||||||| |||||| ||      
T  51493317 atgaattcattttattggggatccaaaaagaacggtcgtcgcggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtggtctaa 51493218  T
Q  542 gctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagc 641  Q
    |||||||| |||||||||| |||||||| ||||||||  |||| ||| ||||||||||| |   ||||||||| |||||||| ||||||   ||||||||    
T  51493217 gctttcgtgacatggaagctttcaatctctcaatgctcggtaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgtcctcaaagc 51493118  T
Q  642 caaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
     ||||||||||| ||   |||||||||||| || | |||||| || |||||||||||| | |||||| |||| ||||| || ||||||    
T  51493117 taaatacttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatct 51493030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 613 - 734
Target Start/End: Original strand, 14647323 - 14647444
Alignment:
Q  613 aactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtc 712  Q
    ||||| ||||||||||||| ||||||||| ||||| |||||  | ||||| |||||||| |||| ||||| ||| |||||||||||||  ||||||||||    
T  14647323 aactctttactcactcgtattctcaaagctaaatatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtc 14647422  T
Q  713 tatggagtacccaatctctgct 734  Q
    | |||||||| |||||||||||    
T  14647423 tttggagtactcaatctctgct 14647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 538 - 710
Target Start/End: Original strand, 30839616 - 30839788
Alignment:
Q  538 cttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctca 637  Q
    ||||| ||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||| |  | ||  | | |||||||||||||| || |||||    
T  30839616 cttggttttcgaaacatggaagctttcaatctctctatgcttggtaaacaaggttggaaactcctcaaagatcctagctccttactcactcatattctca 30839715  T
Q  638 aagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggag 710  Q
    |||| ||||| ||  | ||||||| |||||| || ||   | | | ||| ||||||||||| |||||||||||    
T  30839716 aagcaaaatatttttctaggcggggtttcttagaggctggtatagatcataatccaagctatacttggaggag 30839788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 250 - 404
Target Start/End: Original strand, 44138115 - 44138269
Alignment:
Q  250 ggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaag 349  Q
    ||||| |||||||| ||||| ||||||||  | ||  |||| || |||||||| ||||   | | ||||||||| || ||||||||||| || |||||||    
T  44138115 ggtcgtagtaagaaagcaatcttctcttatcttaaggaccgtatttggaaaaaatgtcaagcgttgagtgctcgatctctatcacgtgccggtaaagaag 44138214  T
Q  350 ttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcct 404  Q
    | ||||||||||| ||  | ||||| ||||| ||||||||||||||||| |||||    
T  44138215 tcttgatcaaatcagtttcccaagccataccttcttattgtatgggtgccttcct 44138269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 710
Target Start/End: Complemental strand, 4050034 - 4049745
Alignment:
Q  421 tgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctac 520  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| || || |||||||| |  ||  |||| ||  ||||| | ||||  ||||| ||  | |    
T  4050034 tgtgaagaaatcgaaagaatgatgaattccttttactggggctccaaaaaaaatggcactcgtagtataaattggatgagatgggagaaacttaccatcc 4049935  T
Q  521 ataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactcctt 620  Q
    |||||  | | || || || |||||||| || |||||||| |||||||| |  |||||| |||||||||| ||||||||| |  | ||| | | ||||||    
T  4049934 ataaatctatgggcggtctaggctttcgcaatatggaagctttcaatctatttatgcttggtaaacaaggatggaaactcctaaaagaccctagctcctt 4049835  T
Q  621 actcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggag 710  Q
    ||||||| |||  |||||||| ||||| ||||| |   || |||||||||||||  |  |  | ||||||||||||||||| ||||||||    
T  4049834 actcacttgtatcctcaaagctaaatatttccccaaatggaatttcttggaagccaacatcagccacaatccaagctacacgtggaggag 4049745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 50181263 - 50181390
Alignment:
Q  337 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 436  Q
    |||||||||||  |||| ||||| || ||||| ||| | || || |||||||||||||| || ||||||||||| || ||| | ||||| || || ||||    
T  50181263 gcaggaaaagagatttttatcaagtcagtggcccaaaccattccatcttattgtatgggagccttcctcattcctacgtctctctgtgatgagattgaaa 50181362  T
Q  437 ggatgatgaattcattttactggggttc 464  Q
    | |||||||| ||||| || ||||||||    
T  50181363 gaatgatgaactcattctattggggttc 50181390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 722
Target Start/End: Complemental strand, 13189658 - 13189595
Alignment:
Q  659 gggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtac 722  Q
    |||| |||||||| |||| | |||| || |||||||||||||||||||| ||||| ||||||||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtac 13189595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 15162917 - 15162882
Alignment:
Q  19 acttattatttgcagatgacagttttttattttgta 54  Q
    |||||||||||||||||||| |||||||||||||||    
T  15162917 acttattatttgcagatgactgttttttattttgta 15162882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 720
Target Start/End: Original strand, 44138453 - 44138540
Alignment:
Q  633 tctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagt 720  Q
    ||||||||| ||||| |||||| |  ||||||||||||| || | ||| || || |||||||||||||| ||||| || |||||||||    
T  44138453 tctcaaagctaaatatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagt 44138540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 729
Target Start/End: Original strand, 50181560 - 50181655
Alignment:
Q  634 ctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    |||||||| |||||||| ||  |  ||||||| ||||| ||  |||| || ||||||||||| || || |||||||||||||||||||| ||||||    
T  50181560 ctcaaagctaaatactttccccgaagggattttttggatgccaatctcggccacaatccaagttatacatggaggagtctatggagtacgcaatct 50181655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 464
Target Start/End: Original strand, 27465299 - 27465381
Alignment:
Q  382 tcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttc 464  Q
    ||||||||||||||||| |||||||| || || || |||| ||||||||| ||  |||||||| |||| ||||| | ||||||    
T  27465299 tcttattgtatgggtgccttcctcatccctacctccttatatgaagaaattgagtggatgatgtattccttttattagggttc 27465381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 600
Target Start/End: Original strand, 44138334 - 44138420
Alignment:
Q  514 actctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactc 600  Q
    ||||| || |||||| | || ||||| |||||||| ||||||||||| |||||| | || |||||| |||| ||| |||||||||||    
T  44138334 actctccacaaaagtttgggaggcctcggctttcgaaacatggaagctttcaatttatctatgcttggtaagcaaagttggaaactc 44138420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 373 - 728
Target Start/End: Original strand, 16861703 - 16862058
Alignment:
Q  373 gctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaa 472  Q
    ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||||| || || |    
T  16861703 gctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactggggttcgaaaaaga 16861802  T
Q  473 atggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttc 572  Q
    ||||  | || ||||| ||  ||||| | ||||  ||||||||| | || ||||||||||||||||| || ||||| ||  |||||||||||||||||||    
T  16861803 atggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggcctcggttttcgcaatttggaagcattcaatctttc 16861902  T
Q  573 aatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaa 672  Q
     |||||| |||| ||| ||||||||||||||   |||||||| |||||||| ||||||   |||||||||||||| |||||  | |||||||||||||||    
T  16861903 tatgcttggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttggaa 16862002  T
Q  673 gcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatc 728  Q
    |||| ||||||||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  16862003 gcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatc 16862058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 310 - 731
Target Start/End: Complemental strand, 21731507 - 21731088
Alignment:
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
    |||||||| ||||| |||||||| ||  | ||||| |||||||| || ||||| || || ||||  || ||  ||||||||||||| || || |||||||    
T  21731507 tcttggagcgctcgttccctatctcgatccggaaa-gaagtttttattaaatcggttgcccaagtcattccaacttattgtatgggggcctttctcattc 21731409  T
Q  410 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaa 509  Q
    | | |||||||||||| ||  | || |||||||||||||| || || ||||  || |  || |||||| | |||||||| ||   |||| | |||| |||    
T  21731408 ctagttctttatgtgacgagttagagaggatgatgaattctttctattgggtctctacaaagaatggtcgtcgcggtataaattagatgagatgggaaaa 21731309  T
Q  510 actcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgac 609  Q
      | || || || ||||||||||| ||||| |||||||| || |||||||| ||||| || | ||||||| |||| ||| | ||||||||||||   |||    
T  21731308 gttaac-ctccacaaaagtcttggaggcctaggctttcgcaatatggaagctttcaacctattaatgcttggtaagcaaagctggaaactcatgatagac 21731210  T
Q  610 tcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggagga 709  Q
    || ||||||||||||||||||| ||||||||| |||||||||||  | ||||| |||||||| |||| ||||||||| |||||||||||||  |||||||    
T  21731209 tctaactccttactcactcgtattctcaaagctaaatacttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggagga 21731110  T
Q  710 gtctatggagtacccaatctct 731  Q
    |||| |||||||| ||||||||    
T  21731109 gtctttggagtactcaatctct 21731088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 355 - 720
Target Start/End: Original strand, 21950903 - 21951268
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || |||||||||||||  ||||| ||||| || || ||||||||||||||||| ||||| |  |||||||| ||||    
T  21950903 atcaaatctgttgctcaagcaattccttcttattgtatggcagcttttctcatccccacctctttatgtgaagaaatagaaagaaccatgaattcttttt 21951002  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    ||||||||||||| |  || ||||| || || || ||  ||||| | ||||  ||| |  |  | ||||||| || |||||| || || |||||| | ||    
T  21951003 actggggttcaaaaaggaacggtagtcggggaataaattggatgagatgggataaattatcattgcataaaactcgtggtggtctcggatttcgtgatat 21951102  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcac-gactcaaactccttactcactcgtactctcaaagccaaatacttccc 653  Q
    |||||| || |||||||| |||||  |||||||||||||||||||| | ||| ||  | | ||||||||||||||| | ||||||||| ||||| |||||    
T  21951103 ggaagcctttaatctttccatgctcggtaaacaaggttggaaactcct-cacagagcccagctccttactcactcgcattctcaaagctaaatatttccc 21951201  T
Q  654 gaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagt 720  Q
      | ||||||||||||| |||  || || |||||||||||||||| |||||||||||  ||||||||    
T  21951202 tcgtcgggatttcttggtagccaatattagtcacaatccaagctatacttggaggagcatatggagt 21951268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 262 - 728
Target Start/End: Complemental strand, 1404 - 938
Alignment:
Q  262 aaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaat 361  Q
    |||||||| ||||||||||| ||  | ||||| ||||| || ||||  || || | |||||| || ||||| || || || || ||| |||| || ||||    
T  1404 aaggcaattttctcttacttgaaggatcgcatatggaagaagtgtcaatcctgtaatgctcgttctctatctcgagctggtaaggaaattttaattaaat 1305  T
Q  362 ccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
    | || || || ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||    
T  1304 cagtcgctcaggctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactgggg 1205  T
Q  462 ttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagca 561  Q
    ||| || || |||||  | || ||||| ||  ||||| | ||||  ||||||||| | || |||||||||||||||||||| ||||| ||  ||||||||    
T  1204 ttcgaaaaagaatggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggccttggttttcgcaatttggaagca 1105  T
Q  562 ttcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcggg 661  Q
    ||||||||||| |||||  |||| ||| ||||||||||||||   |||||||| |||||||| ||||||   |||||||||||||| |||||  | ||||    
T  1104 ttcaatctttctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacggg 1005  T
Q  662 atttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatc 728  Q
    ||||||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||| ||||||    
T  1004 atttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatc 938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 343 - 729
Target Start/End: Complemental strand, 42578412 - 42578026
Alignment:
Q  343 aaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatga 442  Q
    ||||||||| | || ||||| || || |||| ||| || ||||| || ||||| || ||||||||||| | ||| |||||||| ||| | ||||| || |    
T  42578412 aaagaagttctaattaaatcggttgctcaagttatcccttcttactgcatgggggcattcctcattcctagttcattatgtgaggaactagaaagaatca 42578313  T
Q  443 tgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttgg 542  Q
    |||||||||||||  |||| || || ||||| ||| | ||||| || ||  |||||   ||||  || |||||||| |||||||||| |||||| || ||    
T  42578312 tgaattcattttatcggggatccaaaaaaaacggtcgtcgcggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtggtctagg 42578213  T
Q  543 ctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagcc 642  Q
    ||||||| |||||||||| |||||||| |||||||   |||| ||| ||||||||||| |   |||||||||||||||||| ||||||   ||| ||||     
T  42578212 ctttcgtgacatggaagctttcaatctctcaatgcacggtaagcaaagttggaaactcctcaccgactcaaactccttacttactcgtgtcctcgaagct 42578113  T
Q  643 aaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||||||||||| ||  ||||||||||||| || | |||||| || |||||||||||||| ||||||||||| ||||| || ||||||    
T  42578112 aaatacttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatct 42578026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 732
Target Start/End: Complemental strand, 14277458 - 14277249
Alignment:
Q  523 aaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttac 622  Q
    ||||||||| | ||||| |||||||| || | |||||  ||||| || ||||||||  |||| ||| | |||||| |||||   ||||| ||||||||||    
T  14277458 aaaagtcttagaggcctaggctttcgcaatacggaagttttcaacctctcaatgctcggtaagcaaagctggaaattcatgacagactctaactccttac 14277359  T
Q  623 tcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtac 722  Q
    || || ||| |||||||||||||||||||||  | ||||| |||||||| |  | ||||||||| |||||||||||||   |||||||||| ||||||||    
T  14277358 tcgcttgtattctcaaagccaaatacttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtac 14277259  T
Q  723 ccaatctctg 732  Q
     |||||||||    
T  14277258 tcaatctctg 14277249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 710
Target Start/End: Original strand, 29291350 - 29291705
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  29291350 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 29291449  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    | |||||||| || ||| |||| ||  | ||||| ||  ||||| | |||   |||||  |||| || ||||||| |||||| || || ||| |  | ||    
T  29291450 attggggttctaaaaaagatggcagtaggggtataaattggatgagatggaacaaactatctcttcacaaaagtcatggtggactcggatttagggatat 29291549  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccg 654  Q
    |||||| || ||||| || |||||  |||| ||||||||||||||| |    ||  | | ||||||||||||||| | ||||||||||||||| |||||     
T  29291550 ggaagcctttaatctatccatgctcggtaagcaaggttggaaactccttacagaacctagctccttactcactcgcattctcaaagccaaatatttccct 29291649  T
Q  655 aggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggag 710  Q
     | ||||| ||||||||  |  || |||||||||||||||| || |||||||||||    
T  29291650 cgacgggacttcttggataccaatattggtcacaatccaagttatacttggaggag 29291705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 722
Target Start/End: Complemental strand, 13022398 - 13022190
Alignment:
Q  514 actctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaa 613  Q
    |||||||| ||||||| ||| |  || |||||| || | ||||||||||| ||||| || |||||| |||| ||| ||||||||||| ||  |||||| |    
T  13022398 actctacacaaaagtcatggagatctaggcttttgtgatatggaagcatttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactcta 13022299  T
Q  614 actccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtct 713  Q
     ||||||||| ||||||   ||||||| ||||||||||||  |  ||||||||||||| ||    || ||||| ||||||||||  |||||||||| |||    
T  13022298 cctccttacttactcgtgtcctcaaagacaaatacttcccacgaagggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatct 13022199  T
Q  714 atggagtac 722  Q
     ||||||||    
T  13022198 ttggagtac 13022190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 722
Target Start/End: Complemental strand, 13093922 - 13093714
Alignment:
Q  514 actctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaa 613  Q
    |||||||| ||||||| ||| |  || |||||| || | ||||||||||| ||||| || |||||| |||| ||| ||||||||||| ||  |||||| |    
T  13093922 actctacacaaaagtcatggagatctaggcttttgtgatatggaagcatttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactcta 13093823  T
Q  614 actccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtct 713  Q
     ||||||||| ||||||   ||||||| ||||||||| ||  |  ||||||||||||| ||    || ||||| ||||||||||  |||||||||| |||    
T  13093822 cctccttacttactcgtgtcctcaaagacaaatactttccacgaagggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatct 13093723  T
Q  714 atggagtac 722  Q
     ||||||||    
T  13093722 ttggagtac 13093714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 461
Target Start/End: Original strand, 23149572 - 23149819
Alignment:
Q  214 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 313  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  23149572 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 23149671  T
Q  314 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 413  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  23149672 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 23149771  T
Q  414 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  23149772 atctctttgtgatgagatcgaaaagatgatgaactcattttattgggg 23149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 729
Target Start/End: Original strand, 23150017 - 23150087
Alignment:
Q  659 gggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||||||| ||||| ||  |||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  23150017 gggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatct 23150087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 7273424 - 7273515
Alignment:
Q  313 tggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcct 404  Q
    ||||||||||| || || |||||||| || || ||| | ||||| ||||| || || ||||| ||||| ||||||||||||||||| |||||    
T  7273424 tggagtgctcgatctctttcacgtgctggtaaggaaatcttgattaaatcagttgcccaagccataccttcttattgtatgggtgccttcct 7273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 722
Target Start/End: Complemental strand, 33496399 - 33496357
Alignment:
Q  680 ttggtcacaatccaagctacacttggaggagtctatggagtac 722  Q
    ||||||| |||||||||||||| |||||||||| |||||||||    
T  33496399 ttggtcataatccaagctacacatggaggagtccatggagtac 33496357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 370 - 729
Target Start/End: Complemental strand, 52966476 - 52966117
Alignment:
Q  370 caagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg-ttcaaag 468  Q
    |||||||| || ||||| |  ||||| || ||||||||||| | ||| |||||||| ||| | ||||| || |||||||||||||| ||||| ||||||     
T  52966476 caagctatcccttcttactacatgggggcattcctcattcctagttcattatgtgaggaactagaaagaattatgaattcattttattggggattcaaa- 52966378  T
Q  469 aaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatc 568  Q
    || || | | | ||||| || ||  |||||   ||||  || |||||||| |||||||||| |||||| || ||||||||| |||||||||| |||||||    
T  52966377 aagaacgttcgtcgcggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtggtctaggctttcgtgacatggaagctttcaatc 52966278  T
Q  569 tttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttctt 668  Q
    | |||||||||  ||| ||| ||||||||||| |   ||||||||| |||||||| ||||||  |||| |||| ||||||||||| ||  ||||||||||    
T  52966277 tctcaatgcttgttaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgttctctaagctaaatacttccctagaagggatttctt 52966178  T
Q  669 ggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||| || | |||||| || |||||||||||||| ||||||||||| ||||| || ||||||    
T  52966177 ggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatct 52966117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 310 - 734
Target Start/End: Complemental strand, 51141821 - 51141397
Alignment:
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
    |||||||| |||||  ||||||| || || || |||||||||||||| ||||| || || ||||| || ||  ||||||||||| | |  || |||||||    
T  51141821 tcttggagcgctcgtcccctatctcgagccgggaaagaagttttgattaaatcagttgcccaagccattccaacttattgtatgagggactttctcattc 51141722  T
Q  410 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaa 509  Q
    | | |||||||||||| ||| | |||||||| |||||||| || || ||||| || ||  | |||||| | |||||||| ||  |||||   |||| |||    
T  51141721 ctagttctttatgtgaggaattagaaaggataatgaattctttctattggggctctaaacagaatggtcgtcgcggtatcaattggatgaaatgggaaaa 51141622  T
Q  510 actcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgac 609  Q
      | || || || ||||||||||| ||||| |||||| |  | |||||||| ||||| |||||||||||  |||| |||   ||||||||||||    ||    
T  51141621 gttaaccctccacaaaagtcttggaggcctaggcttttgcgatatggaagctttcaacctttcaatgctcggtaagcaaaactggaaactcatgacaaac 51141522  T
Q  610 tcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggagga 709  Q
    || ||||||||||||||||||| |||||||||||||||||||||  | ||||| |||||||| || | | ||||||| |||||||| ||||| ||||| |    
T  51141521 tctaactccttactcactcgtattctcaaagccaaatacttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaa 51141422  T
Q  710 gtctatggagtacccaatctctgct 734  Q
     ||| |||||||| |||| ||||||    
T  51141421 ttctttggagtactcaatatctgct 51141397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 639 - 729
Target Start/End: Complemental strand, 24596234 - 24596144
Alignment:
Q  639 agccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    |||||||||||| ||  | || ||||||||||| |||| | |||||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  24596234 agccaaatactttcctcgtcgagatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatct 24596144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 697
Target Start/End: Original strand, 25898096 - 25898212
Alignment:
Q  581 gtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatct 680  Q
    |||||||||||||||||||| |  | || || | ||||||||| ||||||| ||||||||||||||||||||| |   ||||||||||||| |||  | |    
T  25898096 gtaaacaaggttggaaactcctcaatgattctagctccttacttactcgtattctcaaagccaaatacttccctaaaagggatttcttggatgcaactat 25898195  T
Q  681 tggtcacaatccaagct 697  Q
    ||||||| |||||||||    
T  25898196 tggtcacgatccaagct 25898212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 475
Target Start/End: Original strand, 6864147 - 6864279
Alignment:
Q  343 aaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatga 442  Q
    |||||| | ||||||||||| || |  |||||||| ||||| ||||||||||| | ||| ||| | || || || ||||| ||||| || ||||||||||    
T  6864147 aaagaaatcttgatcaaatcagttgtccaagctattccctcctattgtatgggggattttctcctccccacctccttatgcgaagagattgaaaggatga 6864246  T
Q  443 tgaattcattttactggggttcaaagaaaaatg 475  Q
    ||||||| || ||| || ||||||| |||||||    
T  6864247 tgaattctttctaccggtgttcaaaaaaaaatg 6864279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 722
Target Start/End: Original strand, 2332349 - 2332450
Alignment:
Q  620 tactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggag 719  Q
    |||| ||||||  |||||||||||||||||||  | |  ||||||| ||||| |  ||||| ||||| ||||||||||| |||||||||||||| |||||    
T  2332349 tacttactcgtgttctcaaagccaaatacttcatgtgtagggattt-ttggatgtccatctcggtcataatccaagctatacttggaggagtctttggag 2332447  T
Q  720 tac 722  Q
    |||    
T  2332448 tac 2332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 729
Target Start/End: Complemental strand, 2500518 - 2500477
Alignment:
Q  688 aatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  2500518 aatccaagttacacatggaggagtctatggagtactcaatct 2500477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 346 - 729
Target Start/End: Original strand, 646968 - 647349
Alignment:
Q  346 gaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatga 445  Q
    ||||| ||||||||||| || |||||||| || || |||||||| ||||| || |||||||| || |  ||||| ||||| ||| | ||||||||||||     
T  646968 gaagtcttgatcaaatcggtcgcacaagccattccatcttattgcatgggggcattcctcatacctaagtctttgtgtgacgaacttgaaaggatgatgc 647067  T
Q  446 attcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctt 545  Q
    | || ||||| |||||||| || || |||||  | || || || ||  |  ||   ||||  || ||||||| ||| |||||||  |||||||| |||||    
T  647068 actctttttattggggttctaaaaagaatgggcgtcgtggcatcaattg--tgaaatgggataagctcactccacacaaaagtcagggtggcctaggctt 647165  T
Q  546 tcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaa 645  Q
    |||||| |||||||| |||||||| ||||||||| |||| ||| | ||||||||| |   |||||| || ||| |||| |||||    ||||||||||||    
T  647166 tcgtaatatggaagctttcaatctctcaatgcttggtaagcaaagctggaaactcctaaccgactctaattccatacttactcgcgtcctcaaagccaaa 647265  T
Q  646 tacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    |||||||| || || ||||||||||| || | ||| || ||||| |||||||||||||||||||||||||||||||| ||||||    
T  647266 tacttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatct 647349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 355 - 720
Target Start/End: Complemental strand, 8072675 - 8072311
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || |||||||||||||| ||||| ||||| || || ||||||||||||||| | ||||| |  |||| ||| ||||    
T  8072675 atcaaatctgttgctcaagcaattccttcttattgtatgggagcttttctcatccccacctctttatgtgaagaa-tagaaagaaccatgacttcttttt 8072577  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    ||||||||||||| |  || ||||| || || || ||  ||||| | ||||  ||| |  |  | ||||||| || |||||| || || |||||| | ||    
T  8072576 actggggttcaaaaaggaacggtagtcggggaataaattggatgagatgggataaattatcattgcataaaactcgtggtggtctcggatttcgtgatat 8072477  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcac-gactcaaactccttactcactcgtactctcaaagccaaatacttccc 653  Q
    |||||| || |||||||| |||||  |||||||||||||||||||| | ||| ||  | | ||||||||||||||| | ||||||||| ||||| |||||    
T  8072476 ggaagcctttaatctttccatgctcggtaaacaaggttggaaactcct-cacagagcccagctccttactcactcgcattctcaaagctaaatatttccc 8072378  T
Q  654 gaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagt 720  Q
      | ||||||||||||| |||  || || |||||||||||||||| |||||||||||  ||||||||    
T  8072377 tcgtcgggatttcttggtagccaatatttgtcacaatccaagctatacttggaggagcatatggagt 8072311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 710
Target Start/End: Complemental strand, 4018757 - 4018402
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  4018757 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 4018658  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    | |||||||| || ||| |||| ||  | ||||| ||  ||||| | |||   |||||  |||| || ||||||| |||||| || || ||| |  | ||    
T  4018657 attggggttctaaaaaagatggcagtaggggtataaattggatgagatggaacaaactatctcttcacaaaagtcatggtggactcggatttagggatat 4018558  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccg 654  Q
    |||||| || ||||| || |||||  |||| ||||||||||||||| |    ||  | | ||||||||||||||| | ||||||||||||||| |||||     
T  4018557 ggaagcctttaatctatccatgctcggtaagcaaggttggaaactccttacagaacctagctccttactcactcgcattctcaaagccaaatatttccct 4018458  T
Q  655 aggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggag 710  Q
     | ||||| ||||||||  |  || |||||||||||||||| || |||||||||||    
T  4018457 cgacgggacttcttggataccaatattggtcacaatccaagttatacttggaggag 4018402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 600
Target Start/End: Original strand, 19932460 - 19932566
Alignment:
Q  494 ggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttg 593  Q
    ||||||||||||  ||||||||| |||| |||||||||||||||||| | ||||||||||||| ||| |||| ||| |||||||||  ||||||| ||||    
T  19932460 ggatgtggtgggacaaactcactttacacaaaagtcttggtggccttagatttcgtaacatggtagctttcagtctctcaatgcttgataaacaaagttg 19932559  T
Q  594 gaaactc 600  Q
    |||||||    
T  19932560 gaaactc 19932566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 355 - 707
Target Start/End: Original strand, 24465738 - 24466090
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  24465738 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 24465837  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    | |||||||| || ||| |||| ||  | ||||| ||  ||||| | |||   ||| |  |||| || ||||||| |||||| || || ||| |  | ||    
T  24465838 attggggttctaaaaaagatggcagtaggggtataaattggatgagatggaacaaattatctcttcacaaaagtcatggtggactcggatttagggatat 24465937  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccg 654  Q
    |||||| || ||||| || |||||  |||| ||||||||||||||| |    ||  | | ||||||||||||||| | ||||||||||||||| |||||     
T  24465938 ggaagcctttaatctatccatgctcggtaagcaaggttggaaactccttacagaacctagctccttactcactcgcattctcaaagccaaatatttccct 24466037  T
Q  655 aggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggag 707  Q
     | ||||| ||||||||  |  || |||||||||||||||| || ||||||||    
T  24466038 cgacgggacttcttggataccaatattggtcacaatccaagttatacttggag 24466090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 726
Target Start/End: Complemental strand, 42704298 - 42703993
Alignment:
Q  421 tgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctac 520  Q
    ||||| ||||| ||| |||| |||||||| || ||||||||||| || || |||||| | || || || ||| ||||| ||||||  ||||| |||||||    
T  42704298 tgtgaggaaattgaacggatcatgaattctttctactggggttctaataagaatggtcgccgtggaataaaccggatgcggtgggacaaactaactctac 42704199  T
Q  521 ataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactcctt 620  Q
    | |||| || | | ||||| ||||||||||| |||||||| ||||| || || ||| |  |||| ||| ||||||||||| ||    ||||    ||  |    
T  42704198 acaaaaatcatagaggcctaggctttcgtaatatggaagctttcaacctatctatgttaggtaagcaaagttggaaactcttgtctaactcttcttcact 42704099  T
Q  621 actcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagt 720  Q
     || ||||||  ||||||||||||||| | |||| |  ||||||||||||| |  | | |||| || ||||||||||  |||||||| ||||| ||||||    
T  42704098 tcttactcgtgttctcaaagccaaatattacccgcgaagggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagt 42703999  T
Q  721 acccaa 726  Q
    ||||||    
T  42703998 acccaa 42703993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 680 - 734
Target Start/End: Original strand, 4243149 - 4243203
Alignment:
Q  680 ttggtcacaatccaagctacacttggaggagtctatggagtacccaatctctgct 734  Q
    ||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||    
T  4243149 ttggtcataatccaagctatacatggaggagtctatggagtactcaatctttgct 4243203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 42704489 - 42704386
Alignment:
Q  220 ggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtg 319  Q
    ||||||||||| |||||||| || |||  ||| |  |||||||| || || ||||||||||| ||  | || || |||||||||||||| ||||||||||    
T  42704489 ggtaaatatctcggcctcccctctatggcaggacacagtaagaaagccatcttctcttacttgaaggatcgtatttggaaaaactgtcgctcttggagtg 42704390  T
Q  320 ctcg 323  Q
    ||||    
T  42704389 ctcg 42704386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 337 - 731
Target Start/End: Complemental strand, 238345 - 237951
Alignment:
Q  337 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 436  Q
    ||||| ||||||||| | || |||||  | ||||| ||||| ||||||||||||||||| || ||  | ||||| |||||  | ||||||||||| || |    
T  238345 gcaggtaaagaagttcttattaaatctattgcacatgctatcccctcttattgtatgggggcatttttgattcctacttccctttgtgaagaaatcgaga 238246  T
Q  437 ggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtgg 536  Q
    |||||||||| || || || ||||| || || || || |||  ||| || || ||  ||||| ||||||  ||||| ||||| |||||      ||||||    
T  238245 ggatgatgaactccttctattgggggtcgaaaaagaacggtcaacgaggaataaattggatgaggtgggataaacttactctgcataagtccaatggtgg 238146  T
Q  537 ccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctc 636  Q
     ||||| ||||||||||||||||||||||| || || |||||| || ||||||||||||||||| |    ||  | | ||||||||||||||| | ||||    
T  238145 tcttggttttcgtaacatggaagcattcaacctctctatgcttggttaacaaggttggaaactcctaactgatcctagctccttactcactcgaattctc 238046  T
Q  637 aaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatctct 731  Q
    ||||| ||||| |||||  | |||||||||||||| ||  || |||| ||||||||||||| ||||||||||||  |||||||| | ||||||||    
T  238045 aaagctaaatatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctct 237951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 295 - 729
Target Start/End: Original strand, 46598183 - 46598617
Alignment:
Q  295 tggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgg 394  Q
    |||||||| || | |||||||||||  || || ||||| ||||| |  || ||||||||||| |||||||| |||||||| || || ||||| |||||||    
T  46598183 tggaaaaaatgccagtcttggagtgtccgatcactatctcgtgccgataaggaagttttgataaaatccgttgcacaagccatcccttcttactgtatgg 46598282  T
Q  395 gtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgg 494  Q
    | || || ||||| ||  | ||  | ||||||||| | ||  |||||||||||||||||||||||||||| || ||||||||| |||| || || ||  |    
T  46598283 gagcctttctcatccctgcatcgctttgtgaagaacttgagcggatgatgaattcattttactggggttcgaaaaaaaatggtcgacgaggcatcaattg 46598382  T
Q  495 gatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttgg 594  Q
    |||| | ||||     ||||| || || |||||||| ||||||||||||||||| ||  ||||||| |||||||| || |||||  | || |||||||||    
T  46598383 gatgcgttgggatttcctcacacttcacaaaagtctaggtggccttggctttcgaaatttggaagctttcaatctatctatgctcggcaagcaaggttgg 46598482  T
Q  595 aaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaa 694  Q
    |||||| |   ||||||   ||| ||| ||||  | |  |||||||| ||||||||||| || ||||| |||||||| |||   || ||||| |||||||    
T  46598483 aaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttggatgcaaccctcggtcataatccaa 46598582  T
Q  695 gctacacttggaggagtctatggagtacccaatct 729  Q
    |||| || ||||||||  |||||||||| ||||||    
T  46598583 gctatacctggaggagcttatggagtactcaatct 46598617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 310 - 729
Target Start/End: Original strand, 31800882 - 31801300
Alignment:
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
    ||||||||||| || || ||||| ||||| || || ||||||||||| ||||  || |||||||  || || ||||| |||||||| || || ||||| |    
T  31800882 tcttggagtgcccgatcactatctcgtgccggtaaggaagttttgataaaatttgttgcacaagtcatcccttcttactgtatgggagcctttctcatcc 31800981  T
Q  410 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaa 509  Q
    |  | ||  | ||||||||| | ||  |||||||||||||||||||||||||||| || ||||||||| |||| || || ||  |||||   ||||   |    
T  31800982 ccgcatcgctttgtgaagaacttgagcggatgatgaattcattttactggggttcgaa-aaaaatggtcgacgaggcatcaattggatgcattgggatta 31801080  T
Q  510 actcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgac 609  Q
     ||||| || || |||||||| ||||||||||||||||| ||  ||||||| |||||||| || |||||  | || ||||||||||||||| |   ||||    
T  31801081 cctcacacttcacaaaagtctaggtggccttggctttcgaaatttggaagctttcaatctatctatgctcggcaagcaaggttggaaactcttatccgac 31801180  T
Q  610 tcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggagga 709  Q
    ||   ||| ||| ||||  | |  |||||||| ||||||||||| || | ||| |||||||| ||    || ||||| ||||||||||| ||||||||||    
T  31801181 tcctcctctttattcaccagaatcctcaaagctaaatacttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggagga 31801280  T
Q  710 gtctatggagtacccaatct 729  Q
    |  |||||||||| ||||||    
T  31801281 gcttatggagtactcaatct 31801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 525 - 721
Target Start/End: Complemental strand, 18222955 - 18222759
Alignment:
Q  525 aagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactc 624  Q
    |||||||||||||||||| ||||| || |||||||| |||||||||| |||| || |||| ||| |||| |||||| ||  ||| || | || ||||||     
T  18222955 aagtcttggtggccttggttttcgcaatatggaagctttcaatcttttaatgtttggtaagcaaagttgaaaactcttgaccgaatctacctgcttactt 18222856  T
Q  625 actcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagta 721  Q
    |||||||  || |||| |||||| |||||| |  ||||||||||||| ||   ||| || || ||||||||||| |||||||||||||| |||||||    
T  18222855 actcgtatcctgaaagtcaaatatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagta 18222759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 508 - 722
Target Start/End: Original strand, 43968645 - 43968859
Alignment:
Q  508 aaactcactctacataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacg 607  Q
    ||||||||| |||| ||||||| ||| ||||| ||||||||| | ||| ||||||| ||||| || |||||| |||| ||| ||| ||||||| ||  ||    
T  43968645 aaactcactttacacaaaagtcatggaggcctaggctttcgtgatatgaaagcatttaatctatctatgcttggtaagcaaagtttgaaactcttgaccg 43968744  T
Q  608 actcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggag 707  Q
    |||| | ||||||||| ||||||   ||| ||||||||||||||||  |  ||||||||||||| ||    || ||||| ||||||||||  ||||| ||    
T  43968745 actctacctccttacttactcgtgtcctcgaagccaaatacttcccacgaagggatttcttggatgcctccctcggtcataatccaagctttacttgaag 43968844  T
Q  708 gagtctatggagtac 722  Q
    |||||| ||||||||    
T  43968845 gagtctttggagtac 43968859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 421 - 729
Target Start/End: Original strand, 512360 - 512670
Alignment:
Q  421 tgtgaagaaatggaaaggatgatgaattcattttactggggttc--aaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactct 518  Q
    ||||||||| | ||| ||||||||||||||||||| ||||||||  ||| ||||||||| |||| || || ||  |||||   ||||   | ||||| ||    
T  512360 tgtgaagaacttgaacggatgatgaattcattttattggggttcgaaaaaaaaaatggtcgacggggcatcaattggatgatttgggattacctcacact 512459  T
Q  519 acataaaagtcttggtggccttggctttcgtaacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactcc 618  Q
     || |||||||| ||||||||||||||||| ||  ||||||| |||||||| || |||||  | ||  |||||||||||||| |   ||||||   |||     
T  512460 tcacaaaagtctaggtggccttggctttcgaaatttggaagctttcaatctatctatgctcagcaagtaaggttggaaactcttatccgactcctcctct 512559  T
Q  619 ttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatgga 718  Q
    ||| ||||  | |  |||||||| ||||||||||| || ||||| |||||||| |||   || ||||| ||||||||||| || || |||||  ||||||    
T  512560 ttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatgga 512659  T
Q  719 gtacccaatct 729  Q
    |||| ||||||    
T  512660 gtactcaatct 512670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 214 - 461
Target Start/End: Complemental strand, 12352514 - 12352267
Alignment:
Q  214 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 313  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  12352514 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 12352415  T
Q  314 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 413  Q
    |||| ||||| || || ||| | ||||| |||||| ||||||| || || ||||| ||||| || |||||||| |||||||| || || || || || ||    
T  12352414 ggagcgctcgatctctctcaagggcagggaaagaaattttgattaagtcagtggcccaagccattccctcttactgtatgggagcctttcttatccctac 12352315  T
Q  414 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  12352314 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 12352267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 461
Target Start/End: Original strand, 41146057 - 41146304
Alignment:
Q  214 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 313  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  41146057 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 41146156  T
Q  314 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 413  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  41146157 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 41146256  T
Q  414 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 461  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  41146257 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 41146304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 693
Target Start/End: Complemental strand, 3885431 - 3885290
Alignment:
Q  552 catggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttc 651  Q
    ||||||||| |||||| | |  |||||| |||||||||||||||||||| |    || || | |||||| || ||||||| ||||||||||||||| ||     
T  3885431 catggaagctttcaatttatatatgcttggtaaacaaggttggaaactcgtcattgattctagctccttgcttactcgtattctcaaagccaaatatttt 3885332  T
Q  652 ccgaggcgggatttcttggaagcacatcttggtcacaatcca 693  Q
    |  | | ||||||||||||| ||| || ||||||||||||||    
T  3885331 catatgagggatttcttggatgcaaatattggtcacaatcca 3885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 710
Target Start/End: Original strand, 31402484 - 31402612
Alignment:
Q  581 gtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatct 680  Q
    |||||||||||||||||||| |  | || || | ||||||||| ||||||| |||||||||||||||| |||| ||  ||||| ||| ||| ||| || |    
T  31402484 gtaaacaaggttggaaactcctcaatgattctagctccttacttactcgtattctcaaagccaaatac-tccctagaagggatatctcggatgcaaatat 31402582  T
Q  681 tggtcacaatccaagctacacttggaggag 710  Q
    |||||| ||||||||||  || ||||||||    
T  31402583 tggtcataatccaagctttacatggaggag 31402612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 690
Target Start/End: Complemental strand, 3899347 - 3899207
Alignment:
Q  550 aacatggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatact 649  Q
    ||||||||||| |||||| | || |||||   ||||||||||||||||||| |  | || |  | ||||||||| |||| || ||| ||||||||||| |    
T  3899347 aacatggaagctttcaatttatctatgctcgataaacaaggttggaaactcctcaatgattgtagctccttacttactcatattctgaaagccaaatatt 3899248  T
Q  650 tcccgaggcgggatttcttggaagcacatcttggtcacaat 690  Q
    |||| ||| |||||||| |||| ||| || |||||||||||    
T  3899247 tccctaggagggatttcgtggatgcaaatattggtcacaat 3899207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 729
Target Start/End: Complemental strand, 12352069 - 12351999
Alignment:
Q  659 gggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||||||| ||||| ||  |||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  12352069 gggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatct 12351999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 729
Target Start/End: Original strand, 41146502 - 41146572
Alignment:
Q  659 gggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagtacccaatct 729  Q
    ||||||| ||||| ||  |||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  41146502 gggattttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatct 41146572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 710
Target Start/End: Original strand, 35612049 - 35612404
Alignment:
Q  355 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 454  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  35612049 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 35612148  T
Q  455 actggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggccttggctttcgtaacat 554  Q
    | |||||||| || ||| |||| ||  | ||||| ||  ||||| | |||   |||||  |||| || ||||||| |||||| || || ||| |  | ||    
T  35612149 attggggttctaaaaaagatggcagtaggggtataaattggatgagatggaacaaactatctcttcacaaaagtcatggtggactcggatttagggatat 35612248  T
Q  555 ggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaatacttcccg 654  Q
    |||||| || ||||| || |||||  |||| ||||||||||||||| |    ||  | | ||||||||||||||| | ||||||||||||||| |||||     
T  35612249 ggaagcctttaatctatccatgctcggtaagcaaggttggaaactccttacagaacctagctccttactcactcgcattctcaaagccaaatatttccct 35612348  T
Q  655 aggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggag 710  Q
     | ||||| ||||||||  |  || |||||||||||||||| || |||||||||||    
T  35612349 cgacgggacttcttggataccaatattggtcacaatccaagttatacttggaggag 35612404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 211 - 446
Target Start/End: Original strand, 11625761 - 11625997
Alignment:
Q  211 attggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctgg-aaaaactgtcgg 309  Q
    |||||||| || || ||||| ||||| ||||||||| | ||||| || |||||||| || ||||||||||||||| | |  || ||| ||||| ||||      
T  11625761 attggaagtggcaagtatctgggcctaccatcaatggtgggtcgtagcaagaaggctattttctcttacttaaaagatcttatttggaaaaaaatgtcaa 11625860  T
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
     ||||||| ||| | ||||| ||||| ||||| || ||| | || |||||||| ||||| ||||| || || |||||||| ||||| || || |||||||    
T  11625861 gcttggagcgctagatccctctcacgggcagggaaggaaatattaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattc 11625960  T
Q  410 caacttctttatgtgaagaaatggaaaggatgatgaa 446  Q
    | || ||  | || ||||| || ||||||||||||||    
T  11625961 ctacctccctttgcgaagagatagaaaggatgatgaa 11625997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 410
Target Start/End: Complemental strand, 9182512 - 9182312
Alignment:
Q  211 attggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctgg-aaaaactgtcgg 309  Q
    |||||||| || || ||||| ||||| ||||||||| | ||||| || |||||||| || ||||||||||||||| | |  || ||| ||||| ||||      
T  9182512 attggaagtggcaagtatctgggcctaccatcaatggtgggtcgtagcaagaaggctattttctcttacttaaaagatcttatttggaaaaaaatgtcaa 9182413  T
Q  310 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 409  Q
     ||||||| ||| | ||||| ||||| ||||| || ||| | || |||||||| ||||| ||||| || || |||||||| ||||| || || |||||||    
T  9182412 gcttggagcgctagatccctctcacgggcagggaaggaaatattaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattc 9182313  T
Q  410 c 410  Q
    |    
T  9182312 c 9182312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 721
Target Start/End: Complemental strand, 29929761 - 29929673
Alignment:
Q  633 tctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaagctacacttggaggagtctatggagta 721  Q
    ||||||||  |||||||||||  | |||||||||||||| |  | ||||||||| ||||||||| ||||||| |||||||| |||||||    
T  29929761 tctcaaagataaatacttcccacgacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagta 29929673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 694
Target Start/End: Complemental strand, 27846254 - 27846175
Alignment:
Q  615 ctccttactcactcgtactctcaaagccaaatacttcccgaggcgggatttcttggaagcacatcttggtcacaatccaa 694  Q
    ||||||||| | |||||| || ||||||||||| ||||  ||| ||||||||||||| ||| || |||||||||||||||    
T  27846254 ctccttacttagtcgtaccctaaaagccaaatatttccttaggagggatttcttggatgcaaatattggtcacaatccaa 27846175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 385 - 464
Target Start/End: Complemental strand, 42199438 - 42199359
Alignment:
Q  385 tattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttc 464  Q
    ||||||||||| ||||| || ||||  || ||||||||||||||||| ||||| |  |||||||| ||||||||||||||    
T  42199438 tattgtatgggagcttttcttattcacacctctttatgtgaagaaattgaaagaaccatgaattctttttactggggttc 42199359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 647
Target Start/End: Complemental strand, 17640652 - 17640558
Alignment:
Q  553 atggaagcattcaatctttcaatgctttgtaaacaaggttggaaactcatgcacgactcaaactccttactcactcgtactctcaaagccaaata 647  Q
    ||||||||||| ||||| || |||||| | |||||||||||||||||||| || ||  | |||| |||||| || || | |||||| ||||||||    
T  17640652 atggaagcatttaatctctctatgcttggcaaacaaggttggaaactcatacatgatcctaacttcttacttacacgcattctcaatgccaaata 17640558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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