View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_21 (Length: 398)
Name: NF8403_low_21
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 53677109 - 53676735
Alignment:
| Q |
12 |
tattattctaggaaagaaaataattgaatttaaattaagggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttca |
111 |
Q |
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| T |
53677109 |
tattatgctaggaaagaaaataattgaatttaaattaagggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttca |
53677010 |
T |
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| Q |
112 |
ttttagagtttagacaatttgttgaatctatactctgtatgt----ctttaacacaatttaatttaatgttactcattactcatttgtgattctactaag |
207 |
Q |
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| T |
53677009 |
ttttagagtttagacaatttgttgaatctatattctgtatgtatgtcttgaacacaatttaatttaatgttactcattactcatttgtgattctactaag |
53676910 |
T |
|
| Q |
208 |
gaatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgta |
307 |
Q |
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| T |
53676909 |
gaatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgta |
53676810 |
T |
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| Q |
308 |
gaaaattgtggaagtagaagcatgcttgtggactcaagttgaggatttaggaacaatgacgtagaaattgtaatt |
382 |
Q |
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| T |
53676809 |
gaaaattgtggaagtagaagcctgcttgtggactcaagttgaggatttaggaacaatgacgtagaaattgtaatt |
53676735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 209 - 382
Target Start/End: Complemental strand, 34131280 - 34131103
Alignment:
| Q |
209 |
aatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacgaaa-gtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgta |
307 |
Q |
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| T |
34131280 |
aatgtgtttgttgtaatgctgctaagagttgaaagttggttaagaacgaaaagtaatttatgatgctaacgaattgtaatttgaaatgaataatgattta |
34131181 |
T |
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| Q |
308 |
gaaaattgtggaagtagaagcatgcttgtggactcaagttgaggatttaggaacaa---tgacgtagaaattgtaatt |
382 |
Q |
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| T |
34131180 |
gaaaattgtagaggtagaagcatgcttgtggactccagttgaggatttaggaacaatattgacatagaaattgtaatt |
34131103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 34139310 - 34139200
Alignment:
| Q |
99 |
tatttcaatttcatttt-agagtttagacaatttgttgaatctatactctgtatgtctttaacacaatttaatttaatgttactcattactcatttgtga |
197 |
Q |
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| T |
34139310 |
tatttcaattttatttttagagtttagacaacttgttgaatctatattttgtatgtctttaacacaatttaattta-----actcattactcatttgtga |
34139216 |
T |
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| Q |
198 |
ttctactaaggaatgt |
213 |
Q |
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|||| |||||||||| |
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| T |
34139215 |
ttcttataaggaatgt |
34139200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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