View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_low_23 (Length: 373)

Name: NF8403_low_23
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_low_23
NF8403_low_23
[»] chr5 (10 HSPs)
chr5 (69-338)||(26791497-26791781)
chr5 (130-349)||(26728917-26729152)
chr5 (69-265)||(26756404-26756595)
chr5 (69-265)||(26834105-26834292)
chr5 (119-265)||(26778252-26778394)
chr5 (303-352)||(26756603-26756652)
chr5 (303-352)||(26778195-26778244)
chr5 (69-126)||(26728884-26728941)
chr5 (303-352)||(26834300-26834349)
chr5 (69-126)||(26778359-26778418)
[»] scaffold0112 (5 HSPs)
scaffold0112 (130-349)||(26399-26629)
scaffold0112 (130-265)||(17740-17873)
scaffold0112 (303-349)||(17686-17732)
scaffold0112 (69-125)||(26606-26662)
scaffold0112 (81-126)||(17849-17894)
[»] scaffold0759 (1 HSPs)
scaffold0759 (69-352)||(1609-1915)
[»] scaffold0416 (1 HSPs)
scaffold0416 (69-352)||(7897-8201)
[»] scaffold0233 (2 HSPs)
scaffold0233 (126-309)||(17178-17356)
scaffold0233 (69-126)||(17149-17206)
[»] scaffold0093 (2 HSPs)
scaffold0093 (69-265)||(20440-20631)
scaffold0093 (303-352)||(20639-20688)
[»] chr3 (1 HSPs)
chr3 (217-298)||(12118447-12118535)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 26791497 - 26791781
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttata----agatgaaaacacgc 164  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||  ||||||    ||| ||||||||||    
T  26791497 agttaaaaggtaaaagtaatgtcattattcacaagccttgccttttcagtagtaagacacgagccttgtcttttaagttatagttaagacgaaaacacgc 26791596  T
Q  165 cgaaaagagattatataaacattgtcaaacaccatcaa---------ttattgtacg-ggaa-tgaatatttatttttgatgaaagggaatgaaacaatt 253  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  26791597 cgaaaagagattatataaacattgtcaaacaccatcaagcagctcaattattgtacgaggaagttaatatttatttttgatgaaagggaatgaaacaatt 26791696  T
Q  254 ttaatttcatgacgataccacaaaattgttaaatatcaccatcaatttaatagtgtcagttagtatatggacctctctataaatt 338  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26791697 ttaatttcatgaggataccacaaaattgttaactatcaccatcaatttaatagtgtcagttagtatatgcacctctctataaatt 26791781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 130 - 349
Target Start/End: Original strand, 26728917 - 26729152
Alignment:
Q  130 agccttgtcttttcggttataagatgaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaa---------ttattgtacgggaa-tga 219  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||    
T  26728917 agccttgccttttcagttataagacgaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaagcagctcaattattgtacgggaagtga 26729016  T
Q  220 atatttatt-tttgatgaaagggaatgaaacaattttaatttcatgacgataccacaaaattgttaaatatcaccatcaattta-------atagtgtca 311  Q
    |||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||  | | |       |||||||||    
T  26729017 atatttaaaatttgatgaaagggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatca--atttaataagggagctatagtgtca 26729114  T
Q  312 gttagtatatggacctctctataaattattaaatatag 349  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26729115 gttagtatatggacctctctataaattattaaatatag 26729152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 26756404 - 26756595
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttataagatgaaaacacgccgaa 168  Q
    |||||||||||||||||| ||| ||||||||| |||||||| |||| |||| |  ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  26756404 agttaaaaggtaaaaataatgtgattattcacaagccttgtgtttttagttttttgacacgagccttgccttttcagttataagacgaaaacacgccgaa 26756503  T
Q  169 aagagattatataaacattgtcaaacaccatcaattattgtacgggaatgaatattta-----tttttgatgaaagggaatgaaacaattttaatttcat 263  Q
    ||||||||||||||||||||          |||| |||||||| ||| ||||||||||     |||||||||||||||||||||||||||||||||||||    
T  26756504 aagagattatataaacattg----------tcaactattgtaccggagtgaatatttatttattttttgatgaaagggaatgaaacaattttaatttcat 26756593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 26834105 - 26834292
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttataagatgaaaacacgccgaa 168  Q
    |||||||||||||||||| ||||||||||||| |||||||  ||||||||||    |||||||||||| |||||| ||||||||| ||||||||||||||    
T  26834105 agttaaaaggtaaaaataatgtcattattcacaagccttgctttttcagtta----acacgagccttgccttttcagttataagacgaaaacacgccgaa 26834200  T
Q  169 aagagattatataaacattgtcaaacaccatcaattattgtacgggaatgaatattta-----tttttgatgaaagggaatgaaacaattttaatttcat 263  Q
    |||| |||||||||||||||          |||| |||||||||||| ||||||||||     |||||||||||||||||||||||||||||||||||||    
T  26834201 aagaaattatataaacattg----------tcaactattgtacgggagtgaatatttatttattttttgatgaaagggaatgaaacaattttaatttcat 26834290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 26778394 - 26778252
Alignment:
Q  119 tataagacacgagccttgtcttttcggttataagatgaaaacacgccgaaaagagattatat-aaacattgtcaaacaccatcaattattgtacgggaat 217  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||          |||| ||||||||  || |    
T  26778394 tataagacacgagccttgtcttttcagttataagacgaaaacacgccgaaaagagattttataaaacattg----------tcaactattgtaccagagt 26778305  T
Q  218 gaatattta-----tttttgatgaaagggaatgaaacaattttaatttcatga 265  Q
    |||||||||     |||||||||||||||||||||||||||||||||||||||    
T  26778304 gaatatttatttattttttgatgaaagggaatgaaacaattttaatttcatga 26778252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 26756603 - 26756652
Alignment:
Q  303 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26756603 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 26756652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 26778244 - 26778195
Alignment:
Q  303 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26778244 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 26778195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26728884 - 26728941
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagac 126  Q
    |||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  26728884 agttaataggtaaaaataatgtcattattcacaagccttgccttttcagttataagac 26728941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 26834300 - 26834349
Alignment:
Q  303 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 352  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  26834300 atagtgtcagttgttatatggacctctctataaattgttaaatatagcca 26834349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 26778418 - 26778359
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcatt--attcacgagccttgtcttttcagttataagac 126  Q
    |||||||||||||||||||||||||   |  |||||||||||||||||||||||||||||    
T  26778418 agttaaaaggtaaaaatagtgtcatataagacacgagccttgtcttttcagttataagac 26778359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 130 - 349
Target Start/End: Complemental strand, 26629 - 26399
Alignment:
Q  130 agccttgtcttttcggttataagatgaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaa---------ttattgtacg-ggaa-tg 218  Q
    ||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| |||| |     
T  26629 agccttgccttttaagttataagaggaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaagcagctcaattattgtacgaggaagtt 26530  T
Q  219 aatatttatttttgatgaaagggaatgaaacaattttaatttcatgacgataccacaaaattgttaaatatcaccatcaatttaatagtgtcagttagta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26529 aatatttatttttgatgaaagggaatgaaacaattttaatttcatgaggataccacaaaattgttaaatatcaccatcaattttatagtgtcagttagta 26430  T
Q  319 tatggacctctctataaattattaaatatag 349  Q
    |||||||||||||||||||||||||||||||    
T  26429 tatggacctctctataaattattaaatatag 26399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 265
Target Start/End: Complemental strand, 17873 - 17740
Alignment:
Q  130 agccttgtcttttcggttataagatgaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaattattgtacgggaatgaatattta--- 226  Q
    ||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||       | ||| |||||| ||| ||||||||||       
T  17873 agccttgccttttcagttataagacgaaaacacaccgaaaagagattatataaacattgtcaa-------ctattgttgtaccggagtgaatatttattt 17781  T
Q  227 --tttttgatgaaagggaatgaaacaattttaatttcatga 265  Q
      ||||| |||||||||||||||||||||||||||||||||    
T  17780 attttttaatgaaagggaatgaaacaattttaatttcatga 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 17732 - 17686
Alignment:
Q  303 atagtgtcagttagtatatggacctctctataaattattaaatatag 349  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17732 atagtgtcagttggtatatggacctctctataaattattaaatatag 17686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 26662 - 26606
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataaga 125  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  26662 agttaaaaggtaaaaataatgtcattattcacaagccttgccttttaagttataaga 26606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 17894 - 17849
Alignment:
Q  81 aaaatagtgtcattattcacgagccttgtcttttcagttataagac 126  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||||    
T  17894 aaaataatgtcattattcacaagccttgccttttcagttataagac 17849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 69 - 352
Target Start/End: Original strand, 1609 - 1915
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttataagatgaaaacacgccgaa 168  Q
    ||||||||||||||| || ||| ||||||||| |||||||  |||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  1609 agttaaaaggtaaaactaatgtgattattcacaagccttgcgttttcagttataggacacgagccttggcttttcagttataagacgaaaacacgccgaa 1708  T
Q  169 aagaga--ttatataaacattgtcaaacaccatc---------aattattgtacgggaa-tgaatatttatttttgatgaaagggaatgaaacaatttta 256  Q
    ||||||  ||||||||||||||| || |||||||         ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||    
T  1709 aagagattttatataaacattgtgaagcaccatcaagcagcttaattattgtacggcaagttaatatttatttttgatgaaagggaatgaaacaatttta 1808  T
Q  257 atttcatgacgataccacaaaattgttaaatatcaccatcaattta-----------atagtgtcagttagtatatggacctctctataaattattaaat 345  Q
    ||||||| | |||||||||||||||||||||||||  |||||||||           |||||||||||||||||||||||| |||||||||||||||||     
T  1809 atttcataaggataccacaaaattgttaaatatcatgatcaatttaataagggagctatagtgtcagttagtatatggacccctctataaattattaaac 1908  T
Q  346 atagcca 352  Q
    |||||||    
T  1909 atagcca 1915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 8201 - 7897
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttataagatgaaaacacgccgaa 168  Q
    ||||||||||||||| || ||| ||||||||| |||||||  |||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  8201 agttaaaaggtaaaactaatgtgattattcacaagccttgcgttttcagttataggacacgagccttggcttttcagttataagacgaaaacacgccgaa 8102  T
Q  169 aagagatt--atataaacattgtcaaacaccatcaa---------ttattgtacgggaa-tgaatatttatttttgatgaaagggaatgaaacaatttta 256  Q
    ||||||||  ||||||||||||| || |||||||||         |||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  8101 aagagattttatataaacattgtgaagcaccatcaagcagcttaattattgtacgggaagttaatatttatttttgatgaaagggaatgaaacaatttta 8002  T
Q  257 atttcatgacgataccacaaaattgttaaatatcaccatcaattta-----------atagtgtcagttagtatatggacctctctataaattattaaat 345  Q
    ||||||| | |||||||||||||||||||||||||  |||||||||           |||||||||||||||||||||||  |||||||||||||||||     
T  8001 atttcataaggataccacaaaattgttaaatatcatgatcaatttaataagggagctatagtgtcagttagtatatggac--ctctataaattattaaac 7904  T
Q  346 atagcca 352  Q
    |||||||    
T  7903 atagcca 7897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 17178 - 17356
Alignment:
Q  126 cacgagccttgtcttttcggttataagatgaaaacacgccgaaaagagattatataaacattgtcaaacaccatcaattattgtacgggaatgaatattt 225  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||| ||| |||||||||    
T  17178 cacgagccttgccttttcagttataagacgaaaacacgccgaaaagagattatataaacattgtcaac----------tattgtaccggagtgaatattt 17267  T
Q  226 attt-----ttgatgaaagggaatgaaacaattttaatttcatgacgataccacaaaattgttaaatatcaccatcaatttaatagtgt 309  Q
    ||||     ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  17268 atttattttttgatgaaaaggaatgaaacaattttaatttcatgaggataccacaaaattgttaactatcaccatcaattttatagtgt 17356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 17149 - 17206
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagac 126  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  17149 agttaaaaggtaaaaataatgttattattcacgagccttgccttttcagttataagac 17206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 20440 - 20631
Alignment:
Q  69 agttaaaaggtaaaaatagtgtcattattcacgagccttgtcttttcagttataagacacgagccttgtcttttcggttataagatgaaaacacgccgaa 168  Q
    |||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||    
T  20440 agttaaaaggtaaaaataatatcattattcacaagccttgccttttcagttataagacatgagccttgccttttcagttataagacgaaaacacgccgaa 20539  T
Q  169 aagagattatataaacattgtcaaacaccatcaattattgtacgggaatgaatattta-----tttttgatgaaagggaatgaaacaattttaatttcat 263  Q
     ||||||||||||||||||||    ||||      ||||||||  || ||||||||||     |||||||||||||||||||||||||||||||||||||    
T  20540 gagagattatataaacattgt----cacc------tattgtaccagagtgaatatttatttattttttgatgaaagggaatgaaacaattttaatttcat 20629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 20639 - 20688
Alignment:
Q  303 atagtgtcagttagtatatggacctctctataaattattaaatatagcca 352  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  20639 atagtgtcagttggtatatggacctctctataaattgttaaatatagcca 20688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 12118447 - 12118535
Alignment:
Q  217 tgaatatttatttttgatgaaagggaatgaaacaattttaatttca-------tgacgataccacaaaattgttaaatatcaccatcaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||| || |       | | ||||||||||||||||||||||||||||||||    
T  12118447 tgaatatttatttttgatgaaagggaatgaaacaattttaactttattcccttttaagataccacaaaattgttaaatatcaccatcaa 12118535  T

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