View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_low_25 (Length: 365)

Name: NF8403_low_25
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_low_25
NF8403_low_25
[»] chr1 (5 HSPs)
chr1 (107-355)||(9826456-9826704)
chr1 (121-343)||(9751451-9751674)
chr1 (107-344)||(9812060-9812295)
chr1 (108-182)||(4449635-4449709)
chr1 (107-181)||(31279279-31279353)
[»] scaffold0432 (1 HSPs)
scaffold0432 (107-344)||(5822-6058)
[»] chr2 (3 HSPs)
chr2 (20-181)||(44909797-44909973)
chr2 (107-187)||(43822036-43822116)
chr2 (107-180)||(14106067-14106140)
[»] chr3 (7 HSPs)
chr3 (108-186)||(18177746-18177824)
chr3 (108-188)||(16724876-16724956)
chr3 (107-179)||(20204893-20204965)
chr3 (107-179)||(24835072-24835144)
chr3 (102-179)||(22261736-22261813)
chr3 (102-179)||(22266686-22266763)
chr3 (108-175)||(35269852-35269919)
[»] chr6 (7 HSPs)
chr6 (107-181)||(24977772-24977846)
chr6 (107-186)||(24976341-24976420)
chr6 (107-179)||(12770774-12770846)
chr6 (108-179)||(12766760-12766831)
chr6 (108-181)||(3894855-3894928)
chr6 (125-179)||(12777047-12777101)
chr6 (107-181)||(12800106-12800180)
[»] chr5 (1 HSPs)
chr5 (107-181)||(40235004-40235078)
[»] chr4 (2 HSPs)
chr4 (107-181)||(39936153-39936227)
chr4 (107-180)||(28745642-28745715)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 107 - 355
Target Start/End: Original strand, 9826456 - 9826704
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttcaatttagagaaattaatg 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9826456 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttcaatttagagaaattaatt 9826555  T
Q  207 tatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgtcataacttttttaat 306  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||    
T  9826556 tatgggttgaatgattatctcctttatcacaaagtataccatgaataagtgaaattaacatgcaatcttaaagaataacaatcgtcataacttttttaat 9826655  T
Q  307 taagagctagctaagtccattagttttaaattaatatcctaagtctctg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9826656 taagagctagctaagtccattagttttaaattaatatcctaagtttctg 9826704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 343
Target Start/End: Original strand, 9751451 - 9751674
Alignment:
Q  121 tttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttcaatttagagaaattaatgtatgggttgaatga 220  Q
    |||||||||||||| ||||| ||||| | |||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||    
T  9751451 tttcgatccagggatctgtgagttatagacccaccacgcttcc-ctgcgccactctaatttattgttcaatttagagaagttaatttatgggttgaatga 9751549  T
Q  221 ttatctc--ctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgtcataacttttttaattaagagctagct 318  Q
    |||||||  || |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||     
T  9751550 ttatctctcctttatcacaaagtataccatgaataagtgaaattaacattcaatcttaaagaataacaattgtcataacttttttaattaagagctagcc 9751649  T
Q  319 aagtccattagttttaaattaatat 343  Q
    |||||||||||||||||||||||||    
T  9751650 aagtccattagttttaaattaatat 9751674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 107 - 344
Target Start/End: Original strand, 9812060 - 9812295
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttcaatttagagaaattaatg 206  Q
    |||||||| ||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||  ||| ||||||||||     
T  9812060 ttatcagagcctggttttaatccagggacctatgggttatgggcccaccacgcttccgctgcgccactctgattccttgatcatcttaaagaaattaatt 9812159  T
Q  207 tatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgtcataacttttttaat 306  Q
    ||||| ||||||||||||||| | ||||||| |||| ||||| ||||| |||||||||||||||||  || ||||||||| |||||||||||||||||||    
T  9812160 tatgg-ttgaatgattatctctt-tatcacacagtaaaccatgaataaatgaaattaacatgcaatattatagaataacaattgtcataacttttttaat 9812257  T
Q  307 taagagctagctaagtccattagttttaaattaatatc 344  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  9812258 taagagctaactaagtccattagtttaaaattaatatc 9812295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 4449635 - 4449709
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttc 182  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449635 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttc 4449709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 31279279 - 31279353
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279279 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 31279353  T

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Target: scaffold0432 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 344
Target Start/End: Original strand, 5822 - 6058
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttcaatttagagaaattaatg 206  Q
    |||| ||| ||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||  ||||||| ||||||     
T  5822 ttattagagcctagtttcgatccaggaacctatgggttatggacccaccacgcttccgctgcgtcactctgatttcttgatcatgttagagagattaatt 5921  T
Q  207 tatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgtcataacttttttaat 306  Q
    ||||| | || |||||||||||| ||||| | |||| ||||| ||||| |||| ||||||||||||| || ||||||||| |||||||||||||||||||    
T  5922 tatggttcga-tgattatctcctttatcatacagtacaccatgaataaatgaagttaacatgcaatcttatagaataacaattgtcataacttttttaat 6020  T
Q  307 taagagctagctaagtccattagttttaaattaatatc 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6021 taagagctagctaagtccattagttttaaattaatatc 6058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 44909973 - 44909797
Alignment:
Q  20 aaatatcatgcgaaatgctaaaaacgaagctgattatgcagtaaaatgccaatatcagacccaacatatataagtaa---------------aagaaaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| ||               ||| ||||    
T  44909973 aaatatcatgcgaaatgctaaaaacgaagctgattatgcagtaaaatgccagtaacagacccaaaatatataagaaagatggtagaaagaaaaaggaaga 44909874  T
Q  105 acttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909873 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 44909797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 43822116 - 43822036
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgtt 187  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822116 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgtt 43822036  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 14106067 - 14106140
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 180  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106067 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 14106140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 18177746 - 18177824
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgt 186  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177746 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgt 18177824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 16724876 - 16724956
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgttc 188  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16724876 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttgttgttc 16724956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 20204965 - 20204893
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204965 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 20204893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 24835072 - 24835144
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835072 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24835144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 22261813 - 22261736
Alignment:
Q  102 agaacttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22261813 agaacttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22261736  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 22266686 - 22266763
Alignment:
Q  102 agaacttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22266686 agaacttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22266763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 35269852 - 35269919
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactc 175  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35269852 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgtgccactc 35269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 24977772 - 24977846
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977772 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 24976341 - 24976420
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcttgt 186  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24976341 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttgttgt 24976420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 12770774 - 12770846
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12770774 ttatcagagcctggtttcaatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 12770846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 12766760 - 12766831
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  12766760 tatcagagcctggtttcgatccagggacctatgggttatgggcccaccatgcttccgctgcgccactctgat 12766831  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 3894855 - 3894928
Alignment:
Q  108 tatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3894855 tatcagagtctggtttctatccaaggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 3894928  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 12777047 - 12777101
Alignment:
Q  125 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 12777101  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 12800106 - 12800180
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  12800106 ttattagagcctggtttcgatccagggacctgtaggttatgggcccaccacgcttccgccgcaccactctgattt 12800180  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 40235004 - 40235078
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235004 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 40235078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39936227 - 39936153
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 181  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936227 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 39936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 28745642 - 28745715
Alignment:
Q  107 ttatcagatcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 180  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745642 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 28745715  T

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