View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_28 (Length: 352)
Name: NF8403_low_28
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 32761369 - 32761691
Alignment:
| Q |
19 |
atgatggttgtcaaattccattagcttgtggaagaataggtttatgtaatgataatagtttatca------tcatcatcaacttcttcttcttcaccggt |
112 |
Q |
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| T |
32761369 |
atgatggttgtcaaattccattagcttgtggaagaataggtttatgtaatgataatagtttatcatcatcatcatcatcaacttcttcttcttcaccggt |
32761468 |
T |
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| Q |
113 |
ttgtgcttgtccttcaaatttccatgttgcatcgggtaatctccgtggttgtgttccgaacgatgtgtctcgtactttgccattagcttgtagttcttta |
212 |
Q |
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| T |
32761469 |
ttgttcttgtccttcaaatttccatgttgcatcgggtaatctccatggttgtgttccgaacgatgtgtctcgtactttgccattagcttgtagttcttta |
32761568 |
T |
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| Q |
213 |
acaaataataatcatagtcagtcaaattcttcagttgtttcatttttaaatataggctatggtgtgaagtactttggaaatatttattctgatccaatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32761569 |
acaaataataatcatagtcagtcaaattcttcagttgtttcatttttaaatataggctatggtgtgaagtactttggaaatatttattctgatccaatta |
32761668 |
T |
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| Q |
313 |
tgtttggagtgagtttatctgat |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
32761669 |
tgtttggagtgagtttatctgat |
32761691 |
T |
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