View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_3 (Length: 626)
Name: NF8403_low_3
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 11548164 - 11548374
Alignment:
| Q |
28 |
actaagaaactttatcttgaatctaatctgtcaaattcattgcataccaatcaccaaacgaatctactttatcccccacgtaaaatcctaagatttcata |
127 |
Q |
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| T |
11548164 |
actaagaaactttatcttgaatctaatttgtcaaattcattgcataccaattaccaaacgaaactactttatcccccacgtaaaatcctaagatttcata |
11548263 |
T |
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| Q |
128 |
atccgaagtcaactacaaactatattttgaacctgaatttgaatttgtcaaattcatcaaacactaaagcaattgcataattaccaaggcgaagagttaa |
227 |
Q |
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| T |
11548264 |
atccgaagtcaactacaaactatattttgaacttgaatttgaatttgtcaaattcatcaaacactaaagcaattgcataattaccaaggcgaagagttaa |
11548363 |
T |
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| Q |
228 |
aagtaattgaa |
238 |
Q |
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||||||||||| |
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| T |
11548364 |
aagtaattgaa |
11548374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 303 - 584
Target Start/End: Original strand, 11548438 - 11548719
Alignment:
| Q |
303 |
actaacatgat--ctattaaggcactaacatttgttattcaannnnnnnnnnnnataactcccaatgttgaatgcaaagctaaaaaattgtgatgctact |
400 |
Q |
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| T |
11548438 |
actaacatgataactattaaggcactaacatttgttattcaattttattttt--ataactcccaatgttgaatgcaaagctaaaaaattgtgatgctact |
11548535 |
T |
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| Q |
401 |
tatttgacagatttcagtcaaactgtttctttattgactcagtcaaaccacacattttcttgcttgttcaccccaccttcactggaaaaataaaatgttc |
500 |
Q |
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| T |
11548536 |
tatttgacagatttcagtcaaactgtttcttaattgactcagtcaaaccacacattttcttgcttgttaaccccaccttctccggaaaaaaaaaatgttc |
11548635 |
T |
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| Q |
501 |
acagttcacccaaccttttctgaaaaatacgttcgtttagaacccaacaaacagtaagccatactttcatgtgttcttttaata |
584 |
Q |
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| T |
11548636 |
acagttcacccaaccttttttggaaaatacgttcgtctggaacccaacaaacaataagccatactttcatgtgttcttttaata |
11548719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 435 - 579
Target Start/End: Original strand, 11537057 - 11537201
Alignment:
| Q |
435 |
tgactcagtcaaaccacacattttcttgcttgttcaccccaccttcactggaaaaataaaatgttcacagtt--cacccaaccttttctgaaaaatacgt |
532 |
Q |
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| T |
11537057 |
tgactaagtcaaacaacacccttttttgcttgttcaccccaccttttacggaaaaa-aaatcgttcactgttttcaccca-ccttttctaaaaaatacgt |
11537154 |
T |
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| Q |
533 |
tcgtttagaacccaacaaacagtaagccatactttcatgtgttcttt |
579 |
Q |
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| T |
11537155 |
tcgtctataacccaacaaacagtaagccatactttcatgtgatcttt |
11537201 |
T |
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