View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_33 (Length: 287)
Name: NF8403_low_33
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_33 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 43359935 - 43360143
Alignment:
| Q |
67 |
taacattttaattttaaaatgcaatcaacctactgtatcactaacatttatcactgacatctataaacttaatgccattatatgctttctgcacataatt |
166 |
Q |
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| T |
43359935 |
taacattttagttttaaaatgcaatcaacctactgtatcactaacatt-atcactgacatctatcaacttaatgccattatatgctttctgcacataatt |
43360033 |
T |
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| Q |
167 |
cctcaaaagtgttgatactaaaatgcaagtaatgaatttataccaaatatagaaaactgctgtcatcacaaacattgcaatcacaattatattaaaaatg |
266 |
Q |
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| T |
43360034 |
cctcaaaagtgttgatactaaaatgcaagtaatgaatttataccaaacatagaaaactgctgtcatcacaaacattgcaatcacaattatattaaaaatg |
43360133 |
T |
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| Q |
267 |
ataccttcat |
276 |
Q |
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| T |
43360134 |
ataccttcat |
43360143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 43359598 - 43359649
Alignment:
| Q |
13 |
agagaaaacaaatttgattaaatttttaaaattttactgtaggttgaaagtt |
64 |
Q |
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| T |
43359598 |
agagaaaacaaatttgattaaatttttaaaatttcactgtaggttgaaagtt |
43359649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 92467 - 92505
Alignment:
| Q |
217 |
agaaaactgctgtcatcacaaacattgcaatcacaatta |
255 |
Q |
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| T |
92467 |
agaaaactgttgtcatcacaaacattgcaatcacaatta |
92505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 33101651 - 33101689
Alignment:
| Q |
217 |
agaaaactgctgtcatcacaaacattgcaatcacaatta |
255 |
Q |
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| T |
33101651 |
agaaaactgttgtcatcacaaacattgcaatcacaatta |
33101689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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