View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8403_low_35 (Length: 263)
Name: NF8403_low_35
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 35163584 - 35163709
Alignment:
| Q |
122 |
tgccttcttcatctccaaccttggtctcaaaatgtaccataaccccagaccaaaaatccaacatagcaaaccttaaactctctgtttcagacctacctat |
221 |
Q |
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| T |
35163584 |
tgccttcttcatctccaaccttggtctcaaaatgtaccataaccccagaccaaaaatccaacatagcaaaccttaaactctctgtttcagacctacctat |
35163683 |
T |
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| Q |
222 |
gttgtcttgtcactacatccaaaaag |
247 |
Q |
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| T |
35163684 |
gttgtcttgtcactacatccaaaaag |
35163709 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 35163477 - 35163510
Alignment:
| Q |
21 |
caccaagagtgttgaattacaaaagagagaggga |
54 |
Q |
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| T |
35163477 |
caccaagagtgttgaattacaaaagagagaggga |
35163510 |
T |
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