View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8403_low_7 (Length: 529)
Name: NF8403_low_7
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8403_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Complemental strand, 11040590 - 11040093
Alignment:
| Q |
16 |
taagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040590 |
taagagtcataaatatggaagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
11040491 |
T |
|
| Q |
116 |
taattttcttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatactagc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040490 |
taattttcttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatactagc |
11040391 |
T |
|
| Q |
216 |
taacattagcttatgttattgattgattgtaaaagatactaacgattagattaatctaatgattgagattctgccaaagagcttgaagaagttgtagaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040390 |
taacattagcttatgttattgattgattgtaaaagatactaatgattagattaatctaatgattgagattctgccaaagagcttgaagaagttgtagaac |
11040291 |
T |
|
| Q |
316 |
atccaagtgaaactattttgtatagcttctatattaaaaatccgtaagcttgattcaatcgaaaagatctactacgagtatagtttaattagccttttca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11040290 |
atccaagtgaaactattttgtatagcttctatattaaaaatccgtaagcttgattcaatagaaaagat---ctacgagtatagtttaattagccttttca |
11040194 |
T |
|
| Q |
416 |
agtttgaagattacatttattattgaattgaacaaagagtagagttacctttcttgtttttgggggaacaatctagttccttgttgtcactgttactagt |
515 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
11040193 |
agtttgaagattgcatttattattgaattgaacaaagaatagagttacctttcttgttttttgggacacaatctacttccttgttgtcactgttactagt |
11040094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 11025887 - 11025649
Alignment:
| Q |
16 |
taagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
11025887 |
taagagtcataaatatggtagattccaccaatcaacaagataaaaaacaatgatcctaaaattgatcctgcatttatgaaagctaacttaagaaaaatga |
11025788 |
T |
|
| Q |
116 |
taattttcttacaagtt-ataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatactag |
214 |
Q |
| |
|
||||| ||||||| ||| | ||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11025787 |
taattatcttacaggttaagaataaaaacgaagcaaatttgaacttaaaagctgacctgtgttcactagagcctttgatgaacctgcaaaatcatactag |
11025688 |
T |
|
| Q |
215 |
ctaacattagcttatgttattgattgattgtaaaagata |
253 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
11025687 |
ctagccttagcttatgtcattgattgattgtaaaggata |
11025649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 10992431 - 10992192
Alignment:
| Q |
16 |
taagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
115 |
Q |
| |
|
||||||||||||| ||||||||| |||| | ||||||| ||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
10992431 |
taagagtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctggatttatgaaaactaatttaagaaaaatgg |
10992332 |
T |
|
| Q |
116 |
taattttcttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatactagc |
215 |
Q |
| |
|
||||||| ||| |||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10992331 |
taattttggcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagc |
10992232 |
T |
|
| Q |
216 |
taacattagcttatgttattgattgattgtaaaagatact |
255 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10992231 |
caaacttagtttatgtcattgattgattgtaaaagatact |
10992192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 10930227 - 10930031
Alignment:
| Q |
16 |
taagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
115 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
10930227 |
taagagtcataaatatggtagattgcaccagtcaacaagacaaaaaataacgaacctaaaattgatcctgcatttatgaaaattaatttaagaaaaatga |
10930128 |
T |
|
| Q |
116 |
taattttcttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatact |
212 |
Q |
| |
|
|||||||| || | ||| |||||||| |||||||| ||||||||||||||||||||||||| ||||| | |||| |||||| |||| ||||||| |
|
|
| T |
10930127 |
taattttcatatagattaaaattaaaataaagcaaacttaaacttaaaagctgacctgtgttgactagggtagttgaagaacctacaaagtcatact |
10930031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 433 - 501
Target Start/End: Complemental strand, 11025126 - 11025058
Alignment:
| Q |
433 |
tattattgaattgaacaaagagtagagttacctttcttgtttttgggggaacaatctagttccttgttg |
501 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11025126 |
tattattgaattgaacgaagaatagagttacctttcttctttttggggaaacaatctacttccttgttg |
11025058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 10991407 - 10991225
Alignment:
| Q |
16 |
taagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacga |
115 |
Q |
| |
|
|||||||| |||||||| |||||| || | | | |||||| ||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| | |
|
|
| T |
10991407 |
taagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaaacaatttaa-aaaaaaaa |
10991309 |
T |
|
| Q |
116 |
taattttcttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacct |
199 |
Q |
| |
|
| ||||||||||| | ||||||||||| |||| |||| | | | | |||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
10991308 |
tgattttcttacatgctataattaaaataaagaaaatacagaatgtatagctgacctgtgttgactagcgtcgttgatgaacct |
10991225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University