View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8403_low_9 (Length: 515)

Name: NF8403_low_9
Description: NF8403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8403_low_9
NF8403_low_9
[»] chr3 (5 HSPs)
chr3 (51-495)||(28432213-28432660)
chr3 (251-447)||(10436809-10437005)
chr3 (140-492)||(53459243-53459594)
chr3 (322-447)||(15029678-15029803)
chr3 (175-207)||(28432209-28432241)
[»] chr5 (4 HSPs)
chr5 (140-445)||(40973651-40973958)
chr5 (251-447)||(26369313-26369509)
chr5 (313-445)||(22580774-22580904)
chr5 (313-442)||(22639157-22639286)
[»] scaffold0432 (1 HSPs)
scaffold0432 (140-445)||(8516-8823)
[»] chr4 (9 HSPs)
chr4 (251-447)||(47590833-47591029)
chr4 (251-443)||(48640260-48640452)
chr4 (232-445)||(40346163-40346376)
chr4 (140-492)||(30598566-30598916)
chr4 (325-447)||(56024645-56024767)
chr4 (314-442)||(39060094-39060222)
chr4 (313-442)||(9896879-9897007)
chr4 (255-442)||(37871031-37871219)
chr4 (312-346)||(23108254-23108288)
[»] chr7 (13 HSPs)
chr7 (140-445)||(18299825-18300132)
chr7 (140-490)||(32574886-32575235)
chr7 (315-447)||(40858398-40858530)
chr7 (140-445)||(38141656-38141963)
chr7 (140-490)||(19323637-19323990)
chr7 (140-424)||(5555176-5555462)
chr7 (253-445)||(29626445-29626637)
chr7 (171-490)||(15669140-15669457)
chr7 (140-445)||(29126233-29126540)
chr7 (318-443)||(19294317-19294442)
chr7 (334-445)||(5900109-5900220)
chr7 (333-440)||(41768133-41768240)
chr7 (313-442)||(1031822-1031951)
[»] chr1 (9 HSPs)
chr1 (190-490)||(15759426-15759723)
chr1 (251-447)||(46731597-46731792)
chr1 (251-447)||(26676425-26676621)
chr1 (251-440)||(33676881-33677070)
chr1 (255-435)||(31911938-31912119)
chr1 (134-445)||(16967717-16968032)
chr1 (313-445)||(52022456-52022588)
chr1 (390-444)||(27007768-27007822)
chr1 (313-364)||(4532538-4532589)
[»] chr6 (11 HSPs)
chr6 (140-445)||(7093339-7093646)
chr6 (313-445)||(30975249-30975381)
chr6 (313-445)||(30981688-30981820)
chr6 (313-445)||(30987852-30987984)
chr6 (251-447)||(6028855-6029052)
chr6 (333-440)||(8753301-8753408)
chr6 (340-434)||(32737436-32737530)
chr6 (255-442)||(12912633-12912820)
chr6 (129-215)||(30975428-30975516)
chr6 (129-215)||(30981867-30981955)
chr6 (129-215)||(30988031-30988119)
[»] chr8 (6 HSPs)
chr8 (251-447)||(9932474-9932670)
chr8 (324-441)||(45539924-45540041)
chr8 (313-442)||(13090160-13090289)
chr8 (255-442)||(4034674-4034861)
chr8 (313-442)||(8444633-8444763)
chr8 (406-447)||(13781221-13781262)
[»] chr2 (1 HSPs)
chr2 (315-447)||(29739703-29739835)
[»] scaffold0300 (1 HSPs)
scaffold0300 (313-442)||(9175-9304)
[»] scaffold0074 (1 HSPs)
scaffold0074 (313-364)||(23383-23434)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 51 - 495
Target Start/End: Original strand, 28432213 - 28432660
Alignment:
Q  51 aggaggtgccctaaaagtcaatctttttgcatcagtcatcaacaacaatttgacatttgacattt-acatttacatttacatcagtcaacaacaacttgg 149  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||| |||||||||||||||||    
T  28432213 aggaggtgccctaaaagtcagtctttttgcatcagtcatcaacaacaacttagcatttgacatttgacatttacatttacattagtcaacaacaacttgg 28432312  T
Q  150 cagttgcacacataacttaaattggaataaggaggtgccctaaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaacataaggcaatt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  28432313 cagttgcacacataacttaaattggaataaggaggtgccctaaaagtcagtctttttgtttggcgtctgctgtgtaatttggtaccaacataaggcaatt 28432412  T
Q  250 caattaaaagacaaattttacaaccaaatgcttagttatgtgtggg--tggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttc 347  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28432413 caattaaaagacaaattttacaaccaaatgctcagttatgtgtgggggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttc 28432512  T
Q  348 ttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28432513 ttttgtaaactttggtacaatatatctaattggcttagtttccacatagtgtatcctgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 28432612  T
Q  448 acgagttttcccaaagtatttgctcaacttttaacctcatatgaccat 495  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28432613 acgagtttttccaaagtattcgctcaacttttaacctcatatgaccat 28432660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 251 - 447
Target Start/End: Complemental strand, 10437005 - 10436809
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| ||||||| ||||||||||  |  || ||| | |||||| | || ||||||||||| |||||||| |||    
T  10437005 aattaaaagacacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgattttttt 10436906  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  10436905 ggtaaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgtatcaatttggcaccttaggag 10436809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 492
Target Start/End: Complemental strand, 53459594 - 53459243
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaattggaa-taaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| ||| |||||| ||||| | |||||||||||| |||| |||||||||| |  ||| |    |||||     
T  53459594 aacaacttggcagctgatcacataactgaaatttgaaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtagtagattaccag 53459495  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  |  ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||||||||||||  | ||    
T  53459494 caacatacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattattttc 53459395  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||| ||| ||| ||||||| |||||  |||| ||| | |||| ||| ||||| ||||||| ||| ||||||||||||||||||||  ||||||||| |    
T  53459394 ttgtgttttttttggtaaactgtggtatgatatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcatttgtatcaatttgac 53459295  T
Q  438 accttaggagacgagttttcccaaagtatttgctcaacttttaacctcatatgac 492  Q
    ||||||||   || ||||||| |||| |   ||||||||||||| ||||||||||    
T  53459294 accttagg---cgggttttccaaaagcaaccgctcaacttttaatctcatatgac 53459243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 447
Target Start/End: Original strand, 15029678 - 15029803
Alignment:
Q  322 agcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatca 421  Q
    |||||||||| |||||| ||||||| ||| |||||||||||||| ||||  || | |||| ||||| ||||||||||| ||| ||||||||| || | ||    
T  15029678 agcacttatttctctctagtgatttttttggtaaactttggtactatattgctcactggcttagttaccacatagtgtttcctgaacatgtgccaaacca 15029777  T
Q  422 tttaaatcaatttggcaccttaggag 447  Q
    |||| |||||||||||| ||||||||    
T  15029778 tttatatcaatttggcatcttaggag 15029803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 28432209 - 28432241
Alignment:
Q  175 aataaggaggtgccctaaaagtcagtctttttg 207  Q
    |||||||||||||||||||||||||||||||||    
T  28432209 aataaggaggtgccctaaaagtcagtctttttg 28432241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 140 - 445
Target Start/End: Complemental strand, 40973958 - 40973651
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| |||||||||| ||||| | ||||||||||||||||| ||||||||||||| |||||    ||||||    
T  40973958 aacaacttggcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctttttgcttggcgtctgttgtgtaatagattaccaa 40973859  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||| | |||||||||||||||||||| |||||||| |||| |||||||| |||| ||  || ||| |||| ||| | ||||||||  ||||    
T  40973858 caatagacaatttagttaaaagacaaattttacaatcaaatgctcagttttgtgtgggcggatgtggcatgctggaagacgcaaaacacttatttttctc 40973759  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||||||| ||||||| |||||   ||| ||| | || | ||| ||||||||||||| ||| ||||||||||||||||||||  |||||||||||    
T  40973758 ttgtgatttctttggtaaactgtggtatggtatttctcactgacttaggttccacatagtgtttcctgaacatgtgtcagatcatttgtatcaatttggc 40973659  T
Q  438 accttagg 445  Q
    ||||||||    
T  40973658 accttagg 40973651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 447
Target Start/End: Complemental strand, 26369509 - 26369313
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| ||||||| ||||||||||  |  || ||| | |||||| | || ||||||||||| |||||||| |||    
T  26369509 aattaaaagacacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgattttttt 26369410  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  || ||||||||||||||||||    
T  26369409 ggtaaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgcattaatttggcaccttaggag 26369313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 22580904 - 22580774
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| ||||||||||||||||  ||||||| ||| |||||||||||| |  ||| ||| | |||| ||||| ||| | ||||| ||| ||||||||    
T  22580904 aagatgcaaagcacttattcctctc--gtgatttttttggtaaactttggtgcggtatttctcactggcctagttaccatagagtgtttcctgaacatgt 22580807  T
Q  413 gtcagatcatttaaatcaatttggcaccttagg 445  Q
    |  ||  |||||| |||||||||||||||||||    
T  22580806 gctagcccatttatatcaatttggcaccttagg 22580774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 22639157 - 22639286
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | || |||||||||||||||||||| ||| | |||||||||||  | || ||| | |||| | ||| |||  |||||| ||| ||| ||||    
T  22639157 aagatgcaaaacatttattcctctcttgtgatttttttggcaaactttggtatgacatttcttactggcttggttaccaattagtgtttccggaaaatgt 22639256  T
Q  413 gtcagatcatttaaatcaatttggcacctt 442  Q
    || ||| |||||| ||||||||| ||||||    
T  22639257 gttagaccatttatatcaatttgccacctt 22639286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 140 - 445
Target Start/End: Original strand, 8516 - 8823
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaattggaa-taaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| ||| |||||| ||||| | ||||||||||||||||| ||||||||||||| ||| |    ||||||    
T  8516 aacaacttggcagctgatcacataactaaaatttgaaataaggaagtgcctttaaaagtcagtctttttgcttggcgtctgttgtgtattagattaccaa 8615  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||  | |||||||||||||||||||||| |||||| |||| |||||||| |||| ||  ||  || |||| ||| | ||||||||  ||||    
T  8616 caacagacaatctagttaaaagacaaattttacaacccaatgctaagttttgtgtgggcggatgtggcatgatggaagacgcaaaacacttatttttctc 8715  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
     |||||||||||| ||||||| |||||   ||| ||| || ||| ||| ||||||||||||| | | ||||||||||||||||||||  |||||||||||    
T  8716 gtgtgatttctttggtaaactgtggtatggtatttctcatgggcttaggttccacatagtgtttgctgaacatgtgtcagatcatttgtatcaatttggc 8815  T
Q  438 accttagg 445  Q
    ||||||||    
T  8816 accttagg 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 251 - 447
Target Start/End: Complemental strand, 47591029 - 47590833
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| ||||||| ||||||||||  || ||  || | |||||| | ||||||||||||||||||||||| |||    
T  47591029 aattaaaagacacattttacttccaaatgctcagttatgcgtgggtggatgcgacatgatggaggatgcaaaacacttattcctctcttgtgattttttt 47590930  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||  |||| ||| |||||| ||||| ||||||| ||| ||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  47590929 ggtaaactttggtatgatatttctcattggcttagttaccacataatgtttcctgaacatgtgccagaccatttgtatcaatttggcaccttaggag 47590833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 251 - 443
Target Start/End: Original strand, 48640260 - 48640452
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    ||||||||| || |||||||  ||||||||| ||||||| ||||||||||  |  ||  || | |||||| | ||||||||||||||||||||||| |||    
T  48640260 aattaaaaggcacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgatggaggatgcaaaacacttattcctctcttgtgattttttt 48640359  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcacctta 443  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||| |||||||||||||||||    
T  48640360 ggtaaactttggtatggtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttatatcaatttggcacctta 48640452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 445
Target Start/End: Complemental strand, 40346376 - 40346163
Alignment:
Q  232 taccaacataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttatt 331  Q
    ||||||||  || ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||||||||||||    
T  40346376 taccaacaacagacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcattttagaagacgcagagcacttatt 40346277  T
Q  332 cctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaa 431  Q
    | ||||||||||||| |||  |||||| |||||  |||| ||| | |||| ||| ||||| ||||||| |||  |||||||||||||||||||  |||||    
T  40346276 cttctcttgtgatttttttgataaactgtggtatgatatttctcactggcttaggttccatatagtgtttcctaaacatgtgtcagatcatttgtatcaa 40346177  T
Q  432 tttggcaccttagg 445  Q
    ||||||||||||||    
T  40346176 tttggcaccttagg 40346163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 492
Target Start/End: Complemental strand, 30598916 - 30598566
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaattggaa-taaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| ||| |||||| ||||| | |||||||||||| ||||  ||||||||| |  |||||    ||||||    
T  30598916 aacaacttggcagctgatcacataactgaaatttgaaataaggaagtgcctttaaaagtcagtctctttgcatggcgtctgcttcgtaatagattaccaa 30598817  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||   ||||||| | |||||||| ||||| |||||||||||||| |  | ||||||||| ||| ||  ||  |  |||||||| | ||||||||| ||||    
T  30598816 caactggcaatttagttaaaagataaattatacaaccaaatgctcaagtttgtgtgggtagatgtggcatgttagaagatgcataacacttattcttctc 30598717  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||| ||| ||||||| ||||| | ||| ||| | | |  ||| ||||| ||||| | ||| ||||||||||||||||||||  |||||||||||    
T  30598716 ttgtgattt-tttggtaaactatggtatagtatttctcactagattaggttccatatagtatttcctgaacatgtgtcagatcatttgtatcaatttggc 30598618  T
Q  438 accttaggagacgagttttcccaaagtatttgctcaacttttaacctcatatgac 492  Q
    |||||   ||||||||||||| |||| |   ||||| ||||||| ||||||||||    
T  30598617 acctt---agacgagttttccaaaagcaaccgctcagcttttaatctcatatgac 30598566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 447
Target Start/End: Original strand, 56024645 - 56024767
Alignment:
Q  325 acttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcattt 424  Q
    ||||||||||||||| |||||| |||||||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| |||||| ||||||| |||||    
T  56024645 acttattcctctcttttgattttttttgtaaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatttgtcagaccattt 56024744  T
Q  425 aaatcaatttggcaccttaggag 447  Q
    | |||| ||||||||||||||||    
T  56024745 atatcattttggcaccttaggag 56024767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 39060222 - 39060094
Alignment:
Q  314 agatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtg 413  Q
    ||||||| | ||||||||||||||||||||||| ||| | |||||||||||   ||| ||| |||||| | ||| |||| |||||| ||  ||| ||||     
T  39060222 agatgcaaaacacttattcctctcttgtgatttttttggcaaactttggtatggtatttctcattggcttggttaccacttagtgtttcttgaaaatgta 39060123  T
Q  414 tcagatcatttaaatcaatttggcacctt 442  Q
    |||||||||||| ||||||||||||||||    
T  39060122 tcagatcatttatatcaatttggcacctt 39060094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 9897007 - 9896879
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | |||||||||||||||||| |||| ||| | |||||||||||   ||| ||| | |||| | ||| |||| |||||| ||| ||| ||||    
T  9897007 aagatgcaaaacacttattcctctcttgtaattt-tttggcaaactttggtatggtatttctcactggcttggttaccacttagtgtttcctgaaaatgt 9896909  T
Q  413 gtcagatcatttaaatcaatttggcacctt 442  Q
    ||||||||||||| ||||||||||||||||    
T  9896908 gtcagatcatttatatcaatttggcacctt 9896879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 442
Target Start/End: Complemental strand, 37871219 - 37871031
Alignment:
Q  255 aaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttgta 354  Q
    |||||||| |||||||| || |||||| ||||||| |||| ||||| ||  |   |  |||||||| | ||||||||||||||||||||||| ||||| |    
T  37871219 aaaagacacattttacatccgaatgctcagttatgcgtggatggatgtggtacgatagaagatgcaaaacacttattcctctcttgtgattttttttgga 37871120  T
Q  355 aa-ctttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcacctt 442  Q
    || ||||||||   ||| ||| | |||| | |||   |||||||||  || ||| | ||||||||||||||| ||||||||||||||||    
T  37871119 aagctttggtatggtatttctcactggcttggttataacatagtgttccctgaaaacgtgtcagatcatttatatcaatttggcacctt 37871031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 23108288 - 23108254
Alignment:
Q  312 aaagatgcagagcacttattcctctcttgtgattt 346  Q
    ||||||||| |||||||||||||||||||||||||    
T  23108288 aaagatgcaaagcacttattcctctcttgtgattt 23108254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 140 - 445
Target Start/End: Complemental strand, 18300132 - 18299825
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaattg-gaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||| | |||||  ||||||||| ||||| | |||||| |||||||||| ||||||||||||| |||||    ||||||    
T  18300132 aacaacttggcagctgatcacataattgaaattttgaataaggaagtgcctttaaaagttagtctttttgcttggcgtctgttgtgtaatagattaccaa 18300033  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||  | |||||||| |||||||||||||||||||| |||| |||||||| |||| ||  || ||| ||||  || | ||||||||  ||||    
T  18300032 caacagacaatctagttaaaagataaattttacaaccaaatgctcagttttgtgtgggcggatgtggcatgctggaagacacaaaacacttatttttctc 18299933  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
     |||||||||||| ||||||| |||||   ||| ||| | |||| ||| |||||||| |||| |||  |||||||||||||||||||  |||||||||||    
T  18299932 gtgtgatttctttggtaaactgtggtatggtatttctcactggcttaggttccacatggtgtttcctaaacatgtgtcagatcatttgtatcaatttggc 18299833  T
Q  438 accttagg 445  Q
    ||||||||    
T  18299832 accttagg 18299825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 490
Target Start/End: Original strand, 32574886 - 32575235
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| |   ||||||||| ||||| |||||||||| ||||| | |||||||||||| ||||||||||||||| |  |||||    ||||||    
T  32574886 aacaacttggcagctaatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgtttggcgtctgcttcgtaatagattaccaa 32574985  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
     |  || ||||| | |||||||||||||| ||||||||||| || |  | ||||||||  ||| ||  ||  |  |||| ||||||||||||||| ||||    
T  32574986 taacagacaatttagttaaaagacaaattatacaaccaaattctcaagtttgtgtgggcagatgtggcatgttagaagacgcagagcacttattcttctc 32575085  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||| ||| ||||||| |||||   ||| ||| | |||| | | ||||| ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  32575086 ttgtgatttttttggtaaactgtggtatggtatttctcactggcttgggttccatatagtgtttcctgaacatgtgtcagatcatttgtatcaatttggc 32575185  T
Q  438 accttaggagacgagttttcccaaagtatttgctcaacttttaacctcatatg 490  Q
    ||||||||   || ||||||| |||| | | ||||| ||||||| ||||||||    
T  32575186 accttagg---cgggttttccaaaagcaatcgctcagcttttaatctcatatg 32575235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 447
Target Start/End: Complemental strand, 40858530 - 40858398
Alignment:
Q  315 gatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgt 414  Q
    |||||| | ||||||||||||||||||||||| ||| |||||||||||||  |||| ||| |||||| ||||| ||||||||||| ||| ||||||||||    
T  40858530 gatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatgatatttctcattggcttagttaccacatagtgtttcctgaacatgtgt 40858431  T
Q  415 cagatcatttaaatcaatttggcaccttaggag 447  Q
    |||| |||||  |||||||||||||||||||||    
T  40858430 cagaccatttgtatcaatttggcaccttaggag 40858398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 140 - 445
Target Start/End: Original strand, 38141656 - 38141963
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    |||||||| |||| ||  ||||||||| ||||| |||||||||| ||||| | ||||||||||||  ||| |||||||||| |   ||||    ||||||    
T  38141656 aacaactttgcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctccttgcttggcgtctgcttcttaatagattaccaa 38141755  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||| ||||||||| ||||    
T  38141756 caacagacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagaacacttattcttctc 38141855  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||| ||| ||||||| |||||   ||| ||| | |||| ||| ||||| ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  38141856 ttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcatttgtatcaatttggc 38141955  T
Q  438 accttagg 445  Q
    ||||||||    
T  38141956 accttagg 38141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 490
Target Start/End: Original strand, 19323637 - 19323990
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| |||||||||| ||||| | |||||||||||| |||| |||||||||| |   ||||    ||||||    
T  19323637 aacaacttggcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcttaatagattaccaa 19323736  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcactta----ttcc 333  Q
    ||  || ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||||||||||    |||     
T  19323737 caacagacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttacttattct 19323836  T
Q  334 tctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatt 433  Q
    ||||||||||||| ||  ||||||| |||||   ||| ||| | |||| ||| ||||| ||||||| ||| ||||||||||||||||||||  || ||||    
T  19323837 tctcttgtgattttttcggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcatttgtatgaatt 19323936  T
Q  434 tggcaccttaggagacgagttttcccaaagtatttgctcaacttttaacctcatatg 490  Q
    ||||||||||||   || ||||||| |||| |   ||||||||||||||||||||||    
T  19323937 tggcaccttagg---cgggttttccaaaagcaaccgctcaacttttaacctcatatg 19323990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 140 - 424
Target Start/End: Original strand, 5555176 - 5555462
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| |||||||||| ||||| | |||||||||||| |||| |||||||||| |  |||||    ||||||    
T  5555176 aacaacttggcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtaatagattaccaa 5555275  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  |  ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||| ||||||||| ||||    
T  5555276 caacaaacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagaacacttattcttctc 5555375  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcattt 424  Q
    ||||||||| ||| ||||||| |||||   ||| ||| | |||| ||| ||||| ||||||| ||| ||||||||||||||||||||    
T  5555376 ttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcattt 5555462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 445
Target Start/End: Original strand, 29626445 - 29626637
Alignment:
Q  253 ttaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttg 352  Q
    |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||||||||||||| ||||||||||||| ||| |    
T  29626445 ttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgatttttttgg 29626544  T
Q  353 taaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttagg 445  Q
    |||||| |||||   ||| ||| | |||| ||| ||||| ||||||| ||| ||||||| ||||||||||||  |||||||||||||||||||    
T  29626545 taaactgtggtatggtatttctcactggcttaggttccatatagtgtttcctgaacatgggtcagatcatttgtatcaatttggcaccttagg 29626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 171 - 490
Target Start/End: Original strand, 15669140 - 15669457
Alignment:
Q  171 ttggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaacataaggcaattcaattaaaagacaaatttta 269  Q
    |||||||||||| ||||| | |||||||||||| |||| |||||||||| |  ||| |    ||||||||  || ||||| | ||||||||||||||  |    
T  15669140 ttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtagtagattaccaacaacagacaatttagttaaaagacaaattaaa 15669239  T
Q  270 caaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaata 369  Q
    |||| ||||||| |  | |||||| | |||| ||  ||  |  |||| ||||||||||||||| ||||||||||||| ||| ||||||| |||||   ||    
T  15669240 caactaaatgctcaagtttgtgtgtgcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggta 15669339  T
Q  370 tatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggagacgagttttcccaaagtatttg 469  Q
    | ||| | |||| ||| ||||| ||||||| ||| ||||||||| ||||||||||  |||||||||||||||||||   || ||||||| |||| |   |    
T  15669340 tttctcactggcttaggttccatatagtgtttcctgaacatgtgccagatcatttgtatcaatttggcaccttagg---cgggttttccaaaagcaaccg 15669436  T
Q  470 ctcaacttttaacctcatatg 490  Q
    |||||||||||| ||||||||    
T  15669437 ctcaacttttaatctcatatg 15669457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 140 - 445
Target Start/End: Complemental strand, 29126540 - 29126233
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaattggaa-taaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||| ||| ||  ||||||||| ||||| ||| |||||| ||||| | |||||||||||| |||| |||||||||| |  |||||    ||||||    
T  29126540 aacaacttgacagctgatcacataactgaaatttgaaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtaatagattaccaa 29126441  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||| | |||||||||||||| ||||| ||||||||||  | |||||||| |||| ||  ||  |  |||| | ||| ||||||||| ||||    
T  29126440 caacagacaatttagttaaaagacaaattatacaatcaaatgcttaagtttgtgtgggcggatgtggcatgttagaagacgtagaacacttattcttctc 29126341  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||| ||| ||||||| | |||   ||| | | | |||| ||| |||||  |||||| ||| ||||||| ||||||||||||  |||||||||||    
T  29126340 ttgtgatttttttggtaaactgttgtatggtatttttcactggcttaggttccatttagtgtttcctgaacatgcgtcagatcatttgtatcaatttggc 29126241  T
Q  438 accttagg 445  Q
    ||||||||    
T  29126240 accttagg 29126233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 318 - 443
Target Start/End: Original strand, 19294317 - 19294442
Alignment:
Q  318 gcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcag 417  Q
    ||||||||| | || |||||||||| ||| ||| | |||||||||||   ||| ||||| |||| |||||||||||| |||||||| |||||||||||||    
T  19294317 gcagagcacctttttctctcttgtgttttttttgggaaactttggtaaggtatctctaactggcttagtttccacatggtgtatccagaacatgtgtcag 19294416  T
Q  418 atcatttaaatcaatttggcacctta 443  Q
    | |||||| ||||||||| |||||||    
T  19294417 accatttacatcaatttgacacctta 19294442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 5900220 - 5900109
Alignment:
Q  334 tctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatt 433  Q
    ||||||||||||| ||| | |||| || ||||  ||| | |||||||| ||||||||||||||| ||||| |||||||||||||| |||||| || ||||    
T  5900220 tctcttgtgatttttttgggaaacgtttgtacggtatctttaattggcttagtttccacatagtatatcctgaacatgtgtcagaccatttacataaatt 5900121  T
Q  434 tggcaccttagg 445  Q
    || |||||||||    
T  5900120 tgtcaccttagg 5900109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 41768240 - 41768133
Alignment:
Q  333 ctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaat 432  Q
    |||||||||||||| ||| | ||||||||||||  ||| ||||| |||| |||||||||||| |||| ||| |||||||||| ||| |||||| ||||||    
T  41768240 ctctcttgtgatttttttgggaaactttggtacggtatctctaactggcttagtttccacatggtgtttccagaacatgtgtgagaccatttacatcaat 41768141  T
Q  433 ttggcacc 440  Q
    ||| ||||    
T  41768140 ttgacacc 41768133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 1031822 - 1031951
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | |||||||||||||||||| |||| ||| | || ||||||||  |||| ||| | |||| | ||| |||| |||||| ||| ||| | ||    
T  1031822 aagatgcaaaacacttattcctctcttgtcatttttttggcaagctttggtatgatatttctcactggcttggttaccacttagtgtttcctgaaaacgt 1031921  T
Q  413 gtcagatcatttaaatcaatttggcacctt 442  Q
    ||||||||||||| |||||||| |||||||    
T  1031922 gtcagatcatttatatcaatttagcacctt 1031951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 190 - 490
Target Start/End: Original strand, 15759426 - 15759723
Alignment:
Q  190 taaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaacataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatg 289  Q
    ||||||||||||| |||| |||||||||| |   ||||    ||||||||  || ||||| | |||||||||||||| |||||||||||||| |  | ||    
T  15759426 taaaagtcagtctctttgcttggcgtctgcttcttaatagattaccaacaacagacaatttagttaaaagacaaattatacaaccaaatgctcaagtttg 15759525  T
Q  290 tgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttc 389  Q
    |||||| |||| ||  ||  |  |||| ||||||||||||||| ||||||||||||| ||| ||||||| |||||   ||| ||| | |||| ||| |||    
T  15759526 tgtgggcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttc 15759625  T
Q  390 cacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggagacgagttttcccaaagtatttgctcaacttttaacctcatat 489  Q
    || ||||||| ||| ||||||||||||||||||||  |||||||||||||||||||   || ||||||| |||| |   ||||||||||||| |||||||    
T  15759626 catatagtgtttcctgaacatgtgtcagatcatttgtatcaatttggcaccttagg---cgggttttccaaaagcaaccgctcaacttttaatctcatat 15759722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 251 - 447
Target Start/End: Original strand, 46731597 - 46731792
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| ||||||| ||||||||||  |  ||  || | |||||| | ||||||||||||||||||||||| |||    
T  46731597 aattaaaagacatattttacttccaaatgctcagttatgcgtgggtggatgcggtatgatggaggatgcaaaacacttattcctctcttgtgattttttt 46731696  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||  |||| ||| |||||| ||||| ||||||||||| | | ||||||||| |||| |||||| |||||||| ||||||||||||    
T  46731697 ggtaaactttggtatgatatttctcattggcttagttaccacatagtgt-ttctgaacatgtgacagaccatttatatcaatttcgcaccttaggag 46731792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 447
Target Start/End: Original strand, 26676425 - 26676621
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  | ||||||| ||||||| ||||||||||  |  ||  ||   |||||| | ||||||||||||||||||||||| |||    
T  26676425 aattaaaagacacattttacttctaaatgctcagttatgcgtgggtggatgcggcatgatgggggatgcaaaacacttattcctctcttgtgattttttt 26676524  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  26676525 ggtaaactttggtatggtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgtatcaatttggcaccttaggag 26676621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 251 - 440
Target Start/End: Complemental strand, 33677070 - 33676881
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| | ||||| ||||||||||  |  ||  || | |||||| | ||||||||||||||||||||||| |||    
T  33677070 aattaaaagacacattttacttccaaatgctcaattatgcgtgggtggatgcggcatgatggaggatgcaaaacacttattcctctcttgtgattttttt 33676971  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcacc 440  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  ||||||||||||||    
T  33676970 ggtaaactttggtatggtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgtatcaatttggcacc 33676881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 435
Target Start/End: Complemental strand, 31912119 - 31911938
Alignment:
Q  255 aaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttctttt-gt 353  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||  |  |  |||||| | | ||||||||||||||||||||||| |||| |     
T  31912119 aaaagacacattttacttccaaatgcttagttatgtgtgggtggatacgacgtgatagaagatgtaaaacacttattcctctcttgtgatttattttggc 31912020  T
Q  354 aaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttg 435  Q
    |||||||| |||  ||| ||| |||||| ||||| |||| | |||| ||  ||||||||| |||| |||||| |||||||||    
T  31912019 aaactttgatacggtatttctcattggcttagttaccacgttgtgtttcttgaacatgtgccagaccatttatatcaatttg 31911938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 445
Target Start/End: Complemental strand, 16968032 - 16967717
Alignment:
Q  134 gtcaacaacaacttggcagttgcacacataacttaaatt-ggaataaggaggtg-ccctaaaagtcagtctttttgtttggcgtctgttgggtaatttgg 231  Q
    |||||||||||||||| || | | | ||||||  ||||| |||||||||||||  |||||| ||| |||||||||| |||||||||| |   || |  |     
T  16968032 gtcaacaacaacttggtagctactcgcataacaaaaatttggaataaggaggtttccctaagagttagtctttttgcttggcgtctgctacatattcggt 16967933  T
Q  232 taccaacataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttatt 331  Q
    ||||||||  |  ||||  ||||||||||||||||| |||||| |||||| || | ||||||||||||| ||  ||  || |||||||||| || |||||    
T  16967932 taccaacaacaaacaatataattaaaagacaaatttgacaacctaatgctcagctctgtgtgggtggatgtggcatgatggaagatgcagatcatttatt 16967833  T
Q  332 cctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatc--atttaaatc 429  Q
    ||| | ||||||| | ||  |||||| ||||  |||||| ||||| |||| ||||||||| | |||||| |  |||| ||||||| |||  |||||  ||    
T  16967832 cctttattgtgatattttgggtaaacattggcccaatatttctaactggcttagtttccaaacagtgtaccttgaacgtgtgtcacatcatatttatttc 16967733  T
Q  430 aatttggcaccttagg 445  Q
    ||||||||||||||||    
T  16967732 aatttggcaccttagg 16967717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 313 - 445
Target Start/End: Original strand, 52022456 - 52022588
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | ||||||||||||| | ||||| | ||| ||||||||||||||||||| | | | |||| ||||| |||| |||||| ||  |||||| |    
T  52022456 aagatgcaaaacacttattcctctttcgtgatatttttggtaaactttggtacaatatttttcactggcttagttaccacttagtgtttcttgaacatat 52022555  T
Q  413 gtcagatcatttaaatcaatttggcaccttagg 445  Q
    | |||| |||||| |||||||||||||||||||    
T  52022556 gccagaccatttatatcaatttggcaccttagg 52022588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 27007822 - 27007768
Alignment:
Q  390 cacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttag 444  Q
    |||||||||| ||| |||||||||||||| |||||  ||||||||||||||||||    
T  27007822 cacatagtgtttcctgaacatgtgtcagaccatttgtatcaatttggcaccttag 27007768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 4532589 - 4532538
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggta 364  Q
    |||||||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  4532589 aagatgcaaaacacttattcctctcttgtgatttttttggcaaactttggta 4532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 140 - 445
Target Start/End: Original strand, 7093339 - 7093646
Alignment:
Q  140 aacaacttggcagttgcacacataacttaaatt-ggaataaggaggtgccct-aaaagtcagtctttttgtttggcgtctgttgggtaatttggtaccaa 237  Q
    ||||||||||||| ||  ||||||||| ||||| |||||||||| ||||| | ||||||||||||  ||| |||||||||| |   ||||    ||||||    
T  7093339 aacaacttggcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctccttgcttggcgtctgcttcttaatagattaccaa 7093438  T
Q  238 cataaggcaattcaattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctc 337  Q
    ||  || ||||| | |||||||||||||| |||||||||||||| |  | |||||||| |||| ||  ||  |  |||| ||||||||||||||| ||||    
T  7093439 caacagacaatttagttaaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattcttctc 7093538  T
Q  338 ttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggc 437  Q
    ||||||||| ||| ||||||| |||||   ||| ||| | |||| ||| ||||| ||||||| | |  |||||||||||||||||||  |||||||||||    
T  7093539 ttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgttttctaaacatgtgtcagatcatttgtatcaatttggc 7093638  T
Q  438 accttagg 445  Q
    ||||||||    
T  7093639 accttagg 7093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 30975381 - 30975249
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |||| ||| | | || ||||||| |||||||| ||||  |||||||    
T  30975381 aagatgcatagcacttattcctctcttgtgatttttttggtaaactttggtatcatatttctcactagcttagtttcgacatagtgcatcctaaacatgt 30975282  T
Q  413 gtcagatcatttaaatcaatttggcaccttagg 445  Q
    ||| ||||||||| |||||||||||||||||||    
T  30975281 gtcggatcatttatatcaatttggcaccttagg 30975249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 30981820 - 30981688
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |||| ||| | | || ||||||| |||||||| ||||  |||||||    
T  30981820 aagatgcatagcacttattcctctcttgtgatttttttggtaaactttggtatcatatttctcactagcttagtttcgacatagtgcatcctaaacatgt 30981721  T
Q  413 gtcagatcatttaaatcaatttggcaccttagg 445  Q
    ||| ||||||||| |||||||||||||||||||    
T  30981720 gtcggatcatttatatcaatttggcaccttagg 30981688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 30987984 - 30987852
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |||| ||| | | || ||||||| |||||||| ||||  |||||||    
T  30987984 aagatgcatagcacttattcctctcttgtgatttttttggtaaactttggtatcatatttctcactagcttagtttcgacatagtgcatcctaaacatgt 30987885  T
Q  413 gtcagatcatttaaatcaatttggcaccttagg 445  Q
    ||| ||||||||| |||||||||||||||||||    
T  30987884 gtcggatcatttatatcaatttggcaccttagg 30987852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 447
Target Start/End: Original strand, 6028855 - 6029052
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||||||||| | || || ||||||||||  |  ||  || | |||||  | ||||||||| ||||||||||||| |||    
T  6028855 aattaaaagacacattttacttccaaatgctcaattttgcgtgggtggatgcggtatgatggaggatgctaaacacttattcatctcttgtgattttttt 6028954  T
Q  351 tg-taaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
    || ||||||||||||  |||| ||| | |||| ||||| ||||||||| | ||| ||||||||||| || |||||| |||||||||||||||||||||    
T  6028955 tggtaaactttggtatgatatttctcactggcttagttaccacatagtatttcctgaacatgtgtcggaccatttatatcaatttggcaccttaggag 6029052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 8753408 - 8753301
Alignment:
Q  333 ctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaat 432  Q
    ||||||||||| || ||| | ||| |||||||| | || ||||| |||| |||||||||||| |||||||| |||||||||||||| |||||| || |||    
T  8753408 ctctcttgtgaattttttgggaaaatttggtacgacatctctaactggcttagtttccacatggtgtatccagaacatgtgtcagaccatttacattaat 8753309  T
Q  433 ttggcacc 440  Q
    ||||||||    
T  8753308 ttggcacc 8753301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 32737530 - 32737436
Alignment:
Q  340 gtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaattt 434  Q
    ||||||| ||| | ||||||||||||  ||| | |||| ||| |  |||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  32737530 gtgatttttttgggaaactttggtactgtatttttaatcggcttcatttctacatagtgtatccagaatatgtgtcagatcatttaaatcaattt 32737436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 442
Target Start/End: Complemental strand, 12912820 - 12912633
Alignment:
Q  255 aaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttgta 354  Q
    |||||||| |||||||| || |||||| ||||||| ||||||||||  |  |   |  |||| ||| | ||||||||||||||||||||||| ||| | |    
T  12912820 aaaagacacattttacatccgaatgctcagttatgcgtgggtggatgcggtacgatagaagacgcaaaacacttattcctctcttgtgatttttttggaa 12912721  T
Q  355 aactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcacctt 442  Q
    | ||||||||   ||| ||||| |||| | |||   |||||||||  || ||| | ||| |||| |||||| ||||||||||||||||    
T  12912720 agctttggtatggtatttctaactggcttggttataacatagtgttccctgaaaacgtgccagaccatttatatcaatttggcacctt 12912633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 30975516 - 30975428
Alignment:
Q  129 catcagtcaacaacaacttggcagttgcacacataacttaaa-ttggaataaggaggtg-ccctaaaagtcagtctttttgtttggcgt 215  Q
    |||||||||||||||||||| ||  | | ||||||||  ||| ||||||||| || ||| |||||||||| |||||||||| |||||||    
T  30975516 catcagtcaacaacaacttgacaactactcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcgt 30975428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 30981955 - 30981867
Alignment:
Q  129 catcagtcaacaacaacttggcagttgcacacataacttaaa-ttggaataaggaggtg-ccctaaaagtcagtctttttgtttggcgt 215  Q
    |||||||||||||||||||| ||  | | ||||||||  ||| ||||||||| || ||| |||||||||| |||||||||| |||||||    
T  30981955 catcagtcaacaacaacttgacaactactcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcgt 30981867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 30988119 - 30988031
Alignment:
Q  129 catcagtcaacaacaacttggcagttgcacacataacttaaa-ttggaataaggaggtg-ccctaaaagtcagtctttttgtttggcgt 215  Q
    |||||||||||||||||||| ||  | | ||||||||  ||| ||||||||| || ||| |||||||||| |||||||||| |||||||    
T  30988119 catcagtcaacaacaacttgacaactactcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcgt 30988031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 447
Target Start/End: Complemental strand, 9932670 - 9932474
Alignment:
Q  251 aattaaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttt 350  Q
    |||||||||||| |||||||  ||| ||||| ||||||| ||||||||||  |  || ||| | |||||| | || ||||||||||| |||||||| |||    
T  9932670 aattaaaagacacattttacttccatatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgattttttt 9932571  T
Q  351 tgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
     |||||||||||||   ||| ||| |||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  || ||||||||||||||||||    
T  9932570 ggtaaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttttattaatttggcaccttaggag 9932474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 441
Target Start/End: Original strand, 45539924 - 45540041
Alignment:
Q  324 cacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatt 423  Q
    ||||||||||||||||||||||| ||| | |||||||||||   ||| ||| | |||| | ||| |||| |||| | ||| ||| |||||| |||||| |    
T  45539924 cacttattcctctcttgtgatttttttggcaaactttggtatggtatttctcactggcttggttaccacttagtatttcctgaaaatgtgtgagatcact 45540023  T
Q  424 taaatcaatttggcacct 441  Q
    || |||||||||||||||    
T  45540024 tatatcaatttggcacct 45540041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 13090289 - 13090160
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | ||||||||||||||||||||||| ||| | || ||||||||   ||| ||||| |||| | |||   |||||||||  || ||| | ||    
T  13090289 aagatgcaaaacacttattcctctcttgtgatttttttggaaagctttggtatggtatttctaactggcttggttataacatagtgttccctgaaaacgt 13090190  T
Q  413 gtcagatcatttaaatcaatttggcacctt 442  Q
    |||||| |||||| ||||||||| ||||||    
T  13090189 gtcagaccatttatatcaatttgacacctt 13090160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 442
Target Start/End: Complemental strand, 4034861 - 4034674
Alignment:
Q  255 aaaagacaaattttacaaccaaatgcttagttatgtgtgggtggatatgagatactgaaagatgcagagcacttattcctctcttgtgatttcttttgta 354  Q
    |||||||| |||||||| |  |||||| ||||||| ||||||||||| |  |   |  |||||||  | ||||||||||||||||||||||| ||| | |    
T  4034861 aaaagacacattttacatctgaatgctcagttatgcgtgggtggatacggtacgatagaagatgcgaaacacttattcctctcttgtgatttttttggaa 4034762  T
Q  355 aactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgtcagatcatttaaatcaatttggcacctt 442  Q
    | ||||||||   ||| ||||| |||| | |||   |||||||||  || ||| | |||||||  |||||| ||||||||||||||||    
T  4034761 agctttggtatggtatttctaactggcttggttataacatagtgttccctgaaaacgtgtcaggccatttatatcaatttggcacctt 4034674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 8444763 - 8444633
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtga-tttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatg 411  Q
    |||||||| | |||||||||||||||||||| ||| ||||| |||||||||||  | || ||| | |||| | ||| | |  |||||| | | ||| |||    
T  8444763 aagatgcaaaacacttattcctctcttgtgatttttttttgcaaactttggtatgacatttctcactggcttggttacgaattagtgttttcggaaaatg 8444664  T
Q  412 tgtcagatcatttaaatcaatttggcacctt 442  Q
    ||| ||| |||||| ||||||||||||||||    
T  8444663 tgttagaccatttatatcaatttggcacctt 8444633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 13781262 - 13781221
Alignment:
Q  406 aacatgtgtcagatcatttaaatcaatttggcaccttaggag 447  Q
    |||||||| |||| |||||| |||||||||||||||||||||    
T  13781262 aacatgtgccagaccatttatatcaatttggcaccttaggag 13781221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 447
Target Start/End: Original strand, 29739703 - 29739835
Alignment:
Q  315 gatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgtgt 414  Q
    |||||| | ||||||||||| ||||||||||| ||| ||||||||||||||  ||| ||| |||||| ||||| ||||||||||| ||| |||||||||     
T  29739703 gatgcaaaacacttattcctttcttgtgatttttttggtaaactttggtacggtatttctcattggcttagttaccacatagtgtttcctgaacatgtgc 29739802  T
Q  415 cagatcatttaaatcaatttggcaccttaggag 447  Q
    |||| |||||| |||||||||||| ||||||||    
T  29739803 cagaccatttatatcaatttggcatcttaggag 29739835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 9175 - 9304
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggtacaatatatctaattggcatagtttccacatagtgtatcccgaacatgt 412  Q
    |||||||| | || |||||||||||||||||||| | | | |||||||||||  | || ||| | |||| | ||| |||  |||||| ||| ||| ||||    
T  9175 aagatgcaaaacatttattcctctcttgtgatttttatggcaaactttggtatgacatttctcactggcttggttaccaattagtgtttccggaaaatgt 9274  T
Q  413 gtcagatcatttaaatcaatttggcacctt 442  Q
    || ||| |||||| ||||||||||||||||    
T  9275 gttagaccatttatatcaatttggcacctt 9304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 23383 - 23434
Alignment:
Q  313 aagatgcagagcacttattcctctcttgtgatttcttttgtaaactttggta 364  Q
    |||||||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  23383 aagatgcaaaacacttattcctctcttgtgatttttttggaaaactttggta 23434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University