View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_high_1 (Length: 582)
Name: NF8404_high_1
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 36938000 - 36938549
Alignment:
| Q |
20 |
ccattaactttcaactatgacaaccttagtagtgacaaaacacatgctttaaaattttcaggtgatgtctaccatgacaaccaagtcctccaactcacga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938000 |
ccattaactttcaactatgacaaccttagtagtgacaaaacacatgctttaaatttttcaggtgatgtctaccatgacaaccaagtcctccaactcacga |
36938099 |
T |
|
| Q |
120 |
ggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938100 |
ggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctc |
36938199 |
T |
|
| Q |
220 |
atttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938200 |
atttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagt |
36938299 |
T |
|
| Q |
320 |
ggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatggg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938300 |
ggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatggg |
36938399 |
T |
|
| Q |
420 |
atcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttga |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938400 |
atcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttga |
36938499 |
T |
|
| Q |
520 |
tattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
569 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938500 |
tattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
36938549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 36948247 - 36948793
Alignment:
| Q |
20 |
ccattaactttcaactatgacaaccttagtagtgacaaaacacatgctttaaaattttcaggtgatgtctaccatgacaaccaagtcctccaactcacga |
119 |
Q |
| |
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|||||| | ||||||||||| | ||| || ||||||||||| || | || || ||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
36948247 |
ccattatcattcaactatgaacaacttggtggtgacaaaacaaataccttcaatatttcaggtgatgtctctcaagacaaccaagtcctccaactcacaa |
36948346 |
T |
|
| Q |
120 |
ggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctc |
219 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |
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| T |
36948347 |
attatgagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacattaacacaagtgaagtcacagatttcactactcgtttctc |
36948446 |
T |
|
| Q |
220 |
atttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaag |
318 |
Q |
| |
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|||| |||||||||||| |||||||| ||||| |||||| ||||||||||||||||||| ||||||||||| ||| ||| || || ||||||||| |
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| T |
36948447 |
attttctatcaacacccccaacaaaagttatcatggagatggcatcaccttctatttggcacgccccaattttc--cta--tgtcccaaatagatggaag |
36948542 |
T |
|
| Q |
319 |
tggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgg |
418 |
Q |
| |
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|||||| ||||| |||| | |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| |
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| T |
36948543 |
tggtatcggtctagcgagccgtgttcaattgagtaatccaaattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgactgg |
36948642 |
T |
|
| Q |
419 |
gatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttg |
518 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| ||||| ||| | |||| || ||||||||||||||| |||| |||||||||||||||| || |
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| T |
36948643 |
gatcctaaatatgatcatgttgggattgatgttaattctatcagcactaatcacactacacaatggttcactagcatggatgaaagaggatatgatgctg |
36948742 |
T |
|
| Q |
519 |
atattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
569 |
Q |
| |
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| | ||||| |||| |||||||||||||||| |||||| |||||||||| |
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|
| T |
36948743 |
aagtgagttatgattcaagttcaaacaatttaactgtcacattcacaggtt |
36948793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 36958381 - 36958927
Alignment:
| Q |
20 |
ccattaactttcaactatgacaaccttagtagtgacaaaacacatgctttaaaattttcaggtgatgtctaccatgacaaccaagtcctccaactcacga |
119 |
Q |
| |
|
|||||| | ||||||||||| | ||| || ||||||||||| || | || || ||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
36958381 |
ccattatcattcaactatgaacaacttggtggtgacaaaacaaataccttcaatatttcaggtgatgtctctcaagacaaccaagtcctccaactcacaa |
36958480 |
T |
|
| Q |
120 |
ggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctc |
219 |
Q |
| |
|
||| || || |||||||||| |||||||||||||||||| | |||||||||||| ||||||| || || |||||||| ||||| | |||||||||||| |
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| T |
36958481 |
agtataaggaacacagtctaggcagagtcacatattcaaaattgtttcatctttgggacataaaaacaagcgaagtcacagatttcaatactcgtttctc |
36958580 |
T |
|
| Q |
220 |
atttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaag |
318 |
Q |
| |
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||||||||||||||||| |||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| | ||| || || | ||||| | |
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| T |
36958581 |
atttactatcaacacccccaacaaaacccatcatgcagatggcatgaccttctatttggcacaccccaattttcc----catgtcccaaatatatggagg |
36958676 |
T |
|
| Q |
319 |
tggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgg |
418 |
Q |
| |
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|| || ||||| |||| |||||||| || |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| |
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| T |
36958677 |
cggaatcggtcttgcgagccttgttcaattgagtaatccagattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgaatgg |
36958776 |
T |
|
| Q |
419 |
gatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttg |
518 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||||| ||| | || | || ||||||||||||||| |||| |||||||||||||||| || |
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| T |
36958777 |
gatcctaactatgatcatgttgggattgatgttaattctatcagcactaatcacgctacacaatggttcactagcatggatgaaagaggatatgatgctg |
36958876 |
T |
|
| Q |
519 |
atattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
569 |
Q |
| |
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| | |||||| |||| |||||||||||||||| |||||| || ||||||| |
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|
| T |
36958877 |
aagtcagttacgattcaagttcaaacaatttaactgtcacatttacaggtt |
36958927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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