View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_high_12 (Length: 231)
Name: NF8404_high_12
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 3929958 - 3929758
Alignment:
| Q |
15 |
agaagaatcagaggcgaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttannnnnnnn |
114 |
Q |
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| T |
3929958 |
agaagaatcagaggcgaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttattttgtt- |
3929860 |
T |
|
| Q |
115 |
gttaggatttgaatctaatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaatt |
214 |
Q |
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| T |
3929859 |
gttaggatttgaatctaatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaatt |
3929760 |
T |
|
| Q |
215 |
gt |
216 |
Q |
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|| |
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| T |
3929759 |
gt |
3929758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 13576478 - 13576506
Alignment:
| Q |
14 |
gagaagaatcagaggcgaaagggcttaga |
42 |
Q |
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| T |
13576478 |
gagaagaatcagaggcgaaagggcttaga |
13576506 |
T |
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