View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8404_high_14 (Length: 211)
Name: NF8404_high_14
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 47998098 - 47998268
Alignment:
| Q |
23 |
tgatccaaaggcatgcatgttagacagtccaagtgatggggtattctgatttttctttaagcaaaatattgagtttgtgagtgaaagaaattaatatttg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47998098 |
tgatccaaaggcatgcatgttagacagtccaagtgatggggtattctgatttt-ctttaagcaaaatattgagtttgtgagtgaaagaaattaatatttg |
47998196 |
T |
|
| Q |
123 |
tagattcttatgactatttaaaaacactttataaagtcataaacgaatttgatgatttactcactacaaact |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
47998197 |
tagattcttatgactatttaaaaacactttataaagtcatgaacgaatttgatgatttactcactacgaact |
47998268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University