View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_high_15 (Length: 208)
Name: NF8404_high_15
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 47214551 - 47214375
Alignment:
| Q |
17 |
agaagatttcaagacagcttacacgtgtgtgactgtgtcactaaatggtatatctaatttcacccatccattttctgtccccacaaagcataatttttct |
116 |
Q |
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| T |
47214551 |
agaagatttcaagacagcttacacgtgtgtgactgtgtcactaaatggtatatctaatttcacccatccattttctgtccccacaaagcataatttttct |
47214452 |
T |
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| Q |
117 |
tcttcatacattaagcatatctatttcccatctccacaaccccatcaaatcacatctatgtttgtgtgtatatatat |
193 |
Q |
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| T |
47214451 |
tcttcatacattaagcatatctatttcccatctccacaaccccatcaaatcacatctatgtttgtgtatatatatat |
47214375 |
T |
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