View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_high_3 (Length: 481)
Name: NF8404_high_3
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 28183941 - 28183491
Alignment:
| Q |
12 |
gagagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28183941 |
gagagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagc |
28183842 |
T |
|
| Q |
112 |
atatgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28183841 |
atatgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgcta |
28183742 |
T |
|
| Q |
212 |
accggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28183741 |
accggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggag |
28183642 |
T |
|
| Q |
312 |
agtggaacggcgctcctcttccaatttgttaatttgctcaatctgtttcttggagaaatgatttctttatatatttgtagcagactagtagttgctttga |
411 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28183641 |
agtggaacggcgctcctcttccaatttgttaatttactcaatctgtttcttggagaaatgatttctttatatatttgtagcagactagtagttgctttga |
28183542 |
T |
|
| Q |
412 |
gaagcaatattggtttgtctataagcctatggtaaatgacaaaccaatatcctt |
465 |
Q |
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| T |
28183541 |
gaagcaatattggt---tctataagcctatggtaaatgacaaaccaatatcctt |
28183491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 40945480 - 40945809
Alignment:
| Q |
14 |
gagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcat |
113 |
Q |
| |
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|||||||||| |||||| |||||||| |||||||||||||| |||||||| || |||||| |||||||||| || ||||||||||||||||| |||| |
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| T |
40945480 |
gagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcat |
40945579 |
T |
|
| Q |
114 |
atgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaac |
213 |
Q |
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|||| | |||| | |||| |||||||||| || | ||| || ||||||||| | ||||||||||||||||||||||||||||| | || ||||| |
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| T |
40945580 |
atgagagtggaaacccaacaattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttactaac |
40945679 |
T |
|
| Q |
214 |
cggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagag |
313 |
Q |
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|| ||||| || || || || || |||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||| | ||||| | |||||| |
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| T |
40945680 |
tggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagag |
40945779 |
T |
|
| Q |
314 |
tggaacggcgctcctcttccaatttgttaa |
343 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
40945780 |
tggaacggtgctcctcttccaatttgttaa |
40945809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 40959445 - 40959774
Alignment:
| Q |
14 |
gagaagaattcgaacacatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcat |
113 |
Q |
| |
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|||||||||| |||||| |||||||| |||||||||||||| |||||||| || |||||| |||||||||| || ||||||||||||||||| |||| |
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| T |
40959445 |
gagaagaatttgaacacttcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcat |
40959544 |
T |
|
| Q |
114 |
atgaaaatggacaaagtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaac |
213 |
Q |
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|||| | |||| | |||| |||||||||| || | ||| || ||||||||| | ||||||||||||||||||||||||||||| | || ||||| |
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| T |
40959545 |
atgagagtggaaacccaacaattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttactaac |
40959644 |
T |
|
| Q |
214 |
cggtgaaaaagtgatatcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagag |
313 |
Q |
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|| ||||| || || || || || |||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||| | ||||| | |||||| |
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| T |
40959645 |
tggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagag |
40959744 |
T |
|
| Q |
314 |
tggaacggcgctcctcttccaatttgttaa |
343 |
Q |
| |
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|||||||| ||||||||||||||||||||| |
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| T |
40959745 |
tggaacggtgctcctcttccaatttgttaa |
40959774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 43217269 - 43217396
Alignment:
| Q |
56 |
tttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaat |
155 |
Q |
| |
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|||||||||||||||||| || | ||||||||||||||||||||||||||| |||| ||| || ||| | || |||| |||||| |||||||||| |
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| T |
43217269 |
tttgaggatgaattgaagtctcttttgccaaaggaagttgaaagtgcaagggttgcatttgagaagggaaattctgaaattccaaacagaattaaggaat |
43217368 |
T |
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| Q |
156 |
gtaggtcttatccattgtacaagtttgt |
183 |
Q |
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||||||| || ||| | ||||||||||| |
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| T |
43217369 |
gtaggtcatacccactatacaagtttgt |
43217396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 40550326 - 40550384
Alignment:
| Q |
140 |
aacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttggg |
198 |
Q |
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||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40550326 |
aacaaaatcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggg |
40550384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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