View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_high_6 (Length: 328)
Name: NF8404_high_6
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_high_6 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 8420876 - 8420572
Alignment:
| Q |
12 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
8420876 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatc-------aaattattataggtagatacatatacaaataaccgtcccttttga |
8420784 |
T |
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| Q |
112 |
acaaaatcagaataataaagaaatgaaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggatt |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
8420783 |
acaaaatcagaataataaagaaatgaaaactaggtttattttaattgagtc----actcatagcataactataactataggaagtagttgagg-tggatt |
8420689 |
T |
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| Q |
212 |
ccttatctttaggaaggcatgctaataagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8420688 |
ccttatctttaggaaggcatgctaataagtaaacaacagcaacgtgattaataggagagtagtgttttgactcagcaacaaaaggagacactcatagtca |
8420589 |
T |
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| Q |
312 |
aataagtagaataaatt |
328 |
Q |
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||||||||||||||||| |
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| T |
8420588 |
aataagtagaataaatt |
8420572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 141 - 328
Target Start/End: Original strand, 49171545 - 49171731
Alignment:
| Q |
141 |
ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggattccttatctttaggaaggcatgctaataag |
240 |
Q |
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| T |
49171545 |
ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagg-tggattccttatctttaggaaggcatgctaataag |
49171643 |
T |
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| Q |
241 |
taaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagtagaataaatt |
328 |
Q |
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| T |
49171644 |
taaataagagcaacgtgactaataggagagtagtgttttaactcagcaacaaaaggagtcactcatagtcaaataagtagaataaatt |
49171731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 49171239 - 49171361
Alignment:
| Q |
12 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171239 |
agcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttga |
49171338 |
T |
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| Q |
112 |
acaaaatcagaataataaagaaa |
134 |
Q |
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| T |
49171339 |
acaaaatcagaataataaagaaa |
49171361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 21492313 - 21492622
Alignment:
| Q |
10 |
gtagcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttctt |
109 |
Q |
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|||||||| ||||||||| ||| | |||||||||||||||| ||||||||||| |||||||||||||| |||||| || || ||||| || |||| |
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| T |
21492313 |
gtagcagatagtaggaaacgttattggtctcttcctaattgtatgttatccctaggaaaattattatagctagatatatg----aaaaaccgcccctctt |
21492408 |
T |
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| Q |
110 |
gaacaaaa-tcagaataataaagaaatgaaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgag----- |
203 |
Q |
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| T |
21492409 |
gaacaaaaatcagaaaaataaagaaaagaaaactaagtttattttaattgagcc----actcatagcataactata------ggaggtagttgaaccatg |
21492498 |
T |
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| Q |
204 |
---ggtggattccttatctttaggaaggcatgctaataagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| | | |
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| T |
21492499 |
ggaggtggattccttatctttaggaaggcatactaataagtaaacaacagcaacgtgactaacaagagagtagtgttttgactcagcaacaaaaggggac |
21492598 |
T |
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| Q |
301 |
actcatagtcaaataagtagaata |
324 |
Q |
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|||||| ||||||||||||||||| |
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| T |
21492599 |
actcatggtcaaataagtagaata |
21492622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 45232677 - 45232599
Alignment:
| Q |
80 |
tagatacatatacaaataaccgtccttcttgaacaaaatcag-aataataaagaaatgaaatctaggtttattttaatt |
157 |
Q |
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||||||| |||| | |||||||||| |||||||||||||||| || |||||||||| |||| ||| |||| |||||||| |
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| T |
45232677 |
tagatacgtatatatataaccgtccctcttgaacaaaatcagcaaaaataaagaaaagaaaactatgtttgttttaatt |
45232599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 8730306 - 8730253
Alignment:
| Q |
266 |
gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta |
319 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
8730306 |
gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta |
8730253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 9082193 - 9082140
Alignment:
| Q |
266 |
gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta |
319 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
9082193 |
gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta |
9082140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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