View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8404_low_11 (Length: 252)
Name: NF8404_low_11
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 27514019 - 27513835
Alignment:
| Q |
11 |
atgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtc |
110 |
Q |
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| T |
27514019 |
atgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtc |
27513920 |
T |
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| Q |
111 |
gaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggctgttgttgttttga |
197 |
Q |
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| T |
27513919 |
gaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
27 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
122 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
123 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
173 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 39209906 - 39210001
Alignment:
| Q |
102 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggctgttgttgttttga |
197 |
Q |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga |
39210001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 24037194 - 24037019
Alignment:
| Q |
30 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
125 |
Q |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
126 |
tgttattgaaagagctatcgagctcggtgaagaggt----tcactctctctcactgaatggctgttgttgttttga |
197 |
Q |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctctctcattgaatcgctgttgttgttttga |
24037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 39209847 - 39209911
Alignment:
| Q |
11 |
atgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
75 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209847 |
atgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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