View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8404_low_8 (Length: 308)
Name: NF8404_low_8
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8404_low_8 |
 | |
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| [»] scaffold0007 (2 HSPs) |
| | |
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| [»] scaffold0264 (2 HSPs) |
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| [»] scaffold0074 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 18997403 - 18997126
Alignment:
| Q |
15 |
ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18997403 |
ctgtgttgaatgcatagttcatgcaactaaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac |
18997304 |
T |
|
| Q |
115 |
tcctacaactatttcttttccaccgttgatacaagtcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattga |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18997303 |
tcctacaactatttcttttccactgttgatacaagtcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattga |
18997204 |
T |
|
| Q |
215 |
atcagttttccaaacttgcatatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18997203 |
atcagttttccaaacttgcatatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatg |
18997126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 20238514 - 20238397
Alignment:
| Q |
21 |
tgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctac |
120 |
Q |
| |
|
||||||| ||||| |||| ||||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||| ||| |||||||||||| | |
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|
| T |
20238514 |
tgaatgcgtagttaatgctactcaaaaattgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagat |
20238415 |
T |
|
| Q |
121 |
aactatttcttttccacc |
138 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20238414 |
aactatttcttttccacc |
20238397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 22132498 - 22132381
Alignment:
| Q |
21 |
tgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctac |
120 |
Q |
| |
|
||||||| ||||| |||| ||||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||| ||| |||||||||||| | |
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|
| T |
22132498 |
tgaatgcgtagttaatgctactcaaaaattgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagat |
22132399 |
T |
|
| Q |
121 |
aactatttcttttccacc |
138 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22132398 |
aactatttcttttccacc |
22132381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 20086607 - 20086527
Alignment:
| Q |
15 |
ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacga |
95 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |
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|
| T |
20086607 |
ctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattgcccattatccaaacaagctgtaatttattacga |
20086527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 22205407 - 22205566
Alignment:
| Q |
140 |
ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||| ||||||||| || || || || |||| ||||||||| || ||||||| |
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|
| T |
22205407 |
ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc |
22205506 |
T |
|
| Q |
234 |
atatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgt |
293 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
22205507 |
gaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgatgt |
22205566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 20085751 - 20085594
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcacctat---------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| |||||||||||| || || ||||||| |||||||| || ||||||| |
|
|
| T |
20085751 |
acaagtcctatgtatagcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattatcaaatcagttatctcaacttgcga |
20085652 |
T |
|
| Q |
236 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgt |
293 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
20085651 |
atgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgt |
20085594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 20237664 - 20237632
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcacc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
20237664 |
acaagtcctatgtatagagatataaatatcacc |
20237632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 22131648 - 22131616
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcacc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22131648 |
acaagtcctatgtatagagatataaatatcacc |
22131616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 24384769 - 24384803
Alignment:
| Q |
21 |
tgaatgcatagttcatgcaactcaaaaactgtcct |
55 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24384769 |
tgaatgcatagttaatgcaactcaaaaactgtcct |
24384803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 24385624 - 24385656
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcacc |
177 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
24385624 |
acaagtcctatgtatagcgatataaatatcacc |
24385656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 4888 - 5026
Alignment:
| Q |
15 |
ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac |
114 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| | || | ||||| ||| |
|
|
| T |
4888 |
ctgtgatgaatgcatagttaatgcaactcaaaaactgtccttagattgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatac |
4987 |
T |
|
| Q |
115 |
tcctacaactatttcttttccaccgttgatacaagtcct |
153 |
Q |
| |
|
||| | | | |||||||||||| |||||||||| |||| |
|
|
| T |
4988 |
tccaatgagtctttcttttccactgttgatacaaatcct |
5026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 5765 - 5922
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcaccta---------tacagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| |||||||||||| || || ||||||| ||| |||| || ||||||| |
|
|
| T |
5765 |
acaagtcctatgtatagagatataaatatcaccaaaaattgtagcacaaaccaaaacttgttcactagtacattatccaatgagttatctcaacttgcga |
5864 |
T |
|
| Q |
236 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgt |
293 |
Q |
| |
|
|||| || ||| |||||| ||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
5865 |
atgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgatgt |
5922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 16556 - 16476
Alignment:
| Q |
15 |
ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacga |
95 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
16556 |
ctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattgcccattatccaaacaagctgtaatttattacga |
16476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 15706 - 15549
Alignment:
| Q |
140 |
ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||| ||||||||| || || || || |||| ||||||||| || ||||||| |
|
|
| T |
15706 |
ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc |
15607 |
T |
|
| Q |
234 |
atatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgat |
291 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
15606 |
gaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgat |
15549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 48238 - 48393
Alignment:
| Q |
145 |
acaagtcctatgtatagagatataaatatcacc---tat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgcat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| | | |||||||| || || ||||||| ||||||||| || |||||||| |
|
|
| T |
48238 |
acaagtcctatgtatagagatataaatatcaccaaatattttagcacatatctaaacttgttcactagtacattatcgaatcagttatctcaacttgcaa |
48337 |
T |
|
| Q |
236 |
atgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgat |
291 |
Q |
| |
|
|||| || ||| |||||| ||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
48338 |
atgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgat |
48393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 47386 - 47450
Alignment:
| Q |
16 |
tgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagc |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
47386 |
tgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattgcccattatccaaagaagc |
47450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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