View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8404_low_9 (Length: 254)

Name: NF8404_low_9
Description: NF8404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8404_low_9
NF8404_low_9
[»] chr2 (4 HSPs)
chr2 (105-238)||(40927230-40927363)
chr2 (29-238)||(9612476-9612685)
chr2 (28-91)||(37440471-37440534)
chr2 (29-72)||(27410110-27410153)
[»] chr3 (1 HSPs)
chr3 (32-179)||(41073376-41073523)
[»] chr1 (6 HSPs)
chr1 (28-73)||(46545131-46545176)
chr1 (190-238)||(48506693-48506741)
chr1 (32-91)||(2620037-2620096)
chr1 (28-91)||(13120231-13120294)
chr1 (28-70)||(6165518-6165560)
chr1 (28-68)||(19025110-19025150)
[»] chr6 (5 HSPs)
chr6 (32-179)||(31393192-31393340)
chr6 (28-71)||(21279682-21279725)
chr6 (28-91)||(31895046-31895109)
chr6 (28-72)||(31202379-31202423)
chr6 (28-70)||(32089870-32089912)
[»] scaffold0259 (1 HSPs)
scaffold0259 (28-91)||(7214-7277)
[»] chr7 (4 HSPs)
chr7 (28-91)||(21496766-21496829)
chr7 (29-72)||(29915717-29915760)
chr7 (28-70)||(15964213-15964255)
chr7 (105-178)||(29915610-29915683)
[»] chr4 (4 HSPs)
chr4 (28-91)||(29515257-29515320)
chr4 (28-69)||(52627398-52627439)
chr4 (29-72)||(31978569-31978612)
chr4 (105-171)||(31978646-31978712)
[»] chr5 (1 HSPs)
chr5 (28-70)||(19288066-19288108)
[»] chr8 (1 HSPs)
chr8 (28-70)||(6731781-6731823)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 40927230 - 40927363
Alignment:
Q  105 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 204  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927230 tcaataacattattgacgaaataatccttcgataatacagataattacgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 40927329  T
Q  205 cactaacggatcatttccgtcaataatgatggtg 238  Q
     ||| |||||||||||||||||||||||||||||    
T  40927330 tactgacggatcatttccgtcaataatgatggtg 40927363  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 9612476 - 9612685
Alignment:
Q  29 aaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaaccnnnnnnnngccttcaataacattattgacggaataa 128  Q
    |||||||||||| ||||||||||| ||| || |||||||||| || | |||||||||| ||| |         || |||||||||||| |||||||||||    
T  9612476 aaaattgcattagtgagggatttaaaccgtcagtaattactgacggagaaagccttcaataaacaagaaaaatccctcaataacattactgacggaataa 9612575  T
Q  129 tccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcatcactaacggatcatttccgtcaat 228  Q
     ||||| ||| ||||||||| | ||||| ||||||||||||||  |||||||||| ||||| |||||||||||  | ||| ||||||   ||||||||||    
T  9612576 accctcaatagtacagataaatctgttactgacggataaatccgccagtaaagtcattgacgaatctcccttgtgttactgacggatttgttccgtcaat 9612675  T
Q  229 aatgatggtg 238  Q
    ||||||||||    
T  9612676 aatgatggtg 9612685  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 37440471 - 37440534
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    ||||||||||||||| |||||||||||||||| |||||||||| || || || |||||| ||||    
T  37440471 caaaattgcattacttagggatttagaccctcggtaattactgacggaataaaccttcagtaac 37440534  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 27410153 - 27410110
Alignment:
Q  29 aaaattgcattactgagggatttagaccctctgtaattactggc 72  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  27410153 aaaattgaattactgagggatctagaccctcagtaattactggc 27410110  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 41073376 - 41073523
Alignment:
Q  32 attgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaaccnnnnnnnngccttcaataacattattgacggaataatcc 131  Q
    |||||||||||| ||||||||||||||| ||||||||||||| || || |||||| ||||          || |||||||| ||| |||||||| |||||    
T  41073376 attgcattactgtgggatttagaccctcagtaattactggcggaataaaccttcaataacattcaaaaaaccctcaataacgttactgacggaacaatcc 41073475  T
Q  132 ctcgataatacagataattatgttattgacggataaatccttcagtaa 179  Q
    ||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  41073476 ctcaataattcagagagttacattactgacggataaatccgtcagtaa 41073523  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 46545131 - 46545176
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcg 73  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  46545131 caaaattgcattactgagggatttagaccctctgtatttactggcg 46545176  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 48506741 - 48506693
Alignment:
Q  190 aaatctcccttgcatcactaacggatcatttccgtcaataatgatggtg 238  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  48506741 aaatctctcttacatcactgacggatcatttccgtcaataatgatggtg 48506693  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 2620037 - 2620096
Alignment:
Q  32 attgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    ||||||||| |||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  2620037 attgcattattgagggatttagaccctcagtaattactggcggaataaaccttcaataac 2620096  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 13120231 - 13120294
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    |||||||||||   |||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  13120231 caaaattgcatacatgagggatttagaccctcagtaattactggcggaataaaccttcaataac 13120294  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 6165560 - 6165518
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactg 70  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||    
T  6165560 caaaattgcatcactgagggatttaggccctcagtaattactg 6165518  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 19025110 - 19025150
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattac 68  Q
    ||||||||||||||||||||||||||| ||||  |||||||    
T  19025110 caaaattgcattactgagggatttagatcctcaataattac 19025150  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 31393340 - 31393192
Alignment:
Q  32 attgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac-cnnnnnnnngccttcaataacattattgacggaataatc 130  Q
    |||||||||||||||||||||||||||| ||||||||||||| || || |||||| ||||           ||| ||||||| ||| |||||||| ||||    
T  31393340 attgcattactgagggatttagaccctcagtaattactggcggaataaaccttcaataacattcaaaaaaccctacaataacgttactgacggaacaatc 31393241  T
Q  131 cctcgataatacagataattatgttattgacggataaatccttcagtaa 179  Q
    |||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  31393240 cctcaataattcagagagttacattactgacggataaatccgtcagtaa 31393192  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 21279725 - 21279682
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactgg 71  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  21279725 caaaattacattactgagggatttagaccctcagtaattactgg 21279682  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 31895046 - 31895109
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    ||||||||||||| |||||||||||||||||| |||||||||| || || || |||||| ||||    
T  31895046 caaaattgcattattgagggatttagaccctcagtaattactgacggaataacccttcagtaac 31895109  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 31202379 - 31202423
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggc 72  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  31202379 caaaattgcattactgacggatttagacccttagtaattactggc 31202423  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 32089870 - 32089912
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactg 70  Q
    ||||||||||||||||||||||||||| |||| || |||||||    
T  32089870 caaaattgcattactgagggatttagatcctcagtgattactg 32089912  T

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Target: scaffold0259 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 7214 - 7277
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| || || |||||| ||||    
T  7214 caaaattgcattactgagggatttagactctcagtaattactggcggaataaaccttcaataac 7277  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 21496829 - 21496766
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| || || |||||| ||||    
T  21496829 caaaattgcattactgagggatttagaccctcaataattactggcggaataaaccttcaataac 21496766  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 29915760 - 29915717
Alignment:
Q  29 aaaattgcattactgagggatttagaccctctgtaattactggc 72  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  29915760 aaaattgaattactgagggatctagaccctcagtaattactggc 29915717  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 15964213 - 15964255
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactg 70  Q
    ||||||||||||||| ||||||||||||||||  |||||||||    
T  15964213 caaaattgcattacttagggatttagaccctcattaattactg 15964255  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 29915683 - 29915610
Alignment:
Q  105 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagta 178  Q
    |||||||||||| ||||||||||| ||||| |||||  || | ||||  ||| |||||||||||||| ||||||    
T  29915683 tcaataacattactgacggaataaaccctcaataatttagttgattacattactgacggataaatccatcagta 29915610  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 29515320 - 29515257
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 91  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  29515320 caaaattacattactgagggatttagaccctcagtaattactggcggaataaaccttcaataac 29515257  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 52627398 - 52627439
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattact 69  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  52627398 caaaattgcattaccgagggatttagaccctcagtaattact 52627439  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 31978569 - 31978612
Alignment:
Q  29 aaaattgcattactgagggatttagaccctctgtaattactggc 72  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  31978569 aaaattgaattactgagggatctagaccctcagtaattactggc 31978612  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 31978646 - 31978712
Alignment:
Q  105 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatcc 171  Q
    |||||||||||| ||||||||||| ||||| ||||| ||| | ||||  ||| ||||||||||||||    
T  31978646 tcaataacattactgacggaataaaccctcaataattcagttgattacattactgacggataaatcc 31978712  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 19288108 - 19288066
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactg 70  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  19288108 caaaattacattactgagggatttagaccctcagtaattactg 19288066  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 6731823 - 6731781
Alignment:
Q  28 caaaattgcattactgagggatttagaccctctgtaattactg 70  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||    
T  6731823 caaaattacattactgacggatttagaccctcagtaattactg 6731781  T

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